Gene Pnuc_0968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0968 
Symbol 
ID5053209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp967693 
End bp968703 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content44% 
IMG OID640471133 
Productglycine cleavage T protein (aminomethyl transferase) 
Protein accessionYP_001155748 
Protein GI145589151 
COG category[R] General function prediction only 
COG ID[COG0354] Predicted aminomethyltransferase related to GcvT 
TIGRFAM ID[TIGR03317] folate-binding protein YgfZ 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.776071 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCAAA TTACTCAAAA TGCTTCAATA AAGTCTCAGC CACCCATTTC AGGGGGATGC 
CTTTTGCCTC AATGGGGCAT GATTTTCGTT GAGGGGCCAG ACGCTACTAG TTTTTTACAA 
AGTCAACTCA GTAATTCGCT TCTAGGTATG AAGCGCACCC ATGACCCAGA TATTGCCAAA 
TCATCCGACT CCGTCAGGCT AGTTGGATAT TGCAGCCCTA AAGGGCGCCT CATTTCTAGT 
GCATGGATAG GTCTGTTCCC TACCTCTGAG TCATCAGATG ATCGCTATGT TTTATTTATC 
TCTAAAGATA TTGCAGCAAC TACCGCTAAG CGCTTGGCTA TGTATGTACT GAGATCCAAG 
GTGAAGGTCA TAGACATGTC TTCCGAATGG AATGTATCAG GATTTTTTGA TGCCGCTATT 
CATGACGGAT GTGAACATCT GAAAACATCT CAAGATTGCC TGGTAGCGGA GATCCCCAAT 
GTTTTAGTAC AAGGGCTTAC ATACACCCGC TACCTTATTG CAAAGCTAGG TAACGAAAAA 
ACTGAGCCCC CTTTTGAAGG GGGTATCGAT GCCTGGAACG ACCTAGAGGT ATTAAGTGCC 
ATTCCGAGAA TCGTATTAGC AACGCAGGAG CAGTTTGTTC CTCAAATGAT TAATTTTGAG 
TCTGTTGCTG GAGTCGATTT CAAAAAAGGG TGTTATCCCG GCCAAGAGAT CGTGGCACGC 
AGTCAATATC GAGGCGCCAT TAAAAGACGA CTTTTTCTAG CAAACATTAC TAATGCTTCG 
ATAAAAGATG CACTGACATC ACCCGGTACT GAGCTATTTC ACAGTGATGA TTCAAATCAG 
CCAGCGGGTA TGGTTGTCCT ATCCGCCCCA AGCATGTTTG AGTCCGGAAG GATTGATCTG 
CAGGTGGAGT GCAAATTAGA GGCGCTCGAA AGTGGTTCAA TTCATCTAGG CGCCCCTGAT 
GGACCTATGT TAAAAATAGA TTCATTGCCT TACCCTCTAT TGGAAATTTA A
 
Protein sequence
MNQITQNASI KSQPPISGGC LLPQWGMIFV EGPDATSFLQ SQLSNSLLGM KRTHDPDIAK 
SSDSVRLVGY CSPKGRLISS AWIGLFPTSE SSDDRYVLFI SKDIAATTAK RLAMYVLRSK 
VKVIDMSSEW NVSGFFDAAI HDGCEHLKTS QDCLVAEIPN VLVQGLTYTR YLIAKLGNEK 
TEPPFEGGID AWNDLEVLSA IPRIVLATQE QFVPQMINFE SVAGVDFKKG CYPGQEIVAR 
SQYRGAIKRR LFLANITNAS IKDALTSPGT ELFHSDDSNQ PAGMVVLSAP SMFESGRIDL 
QVECKLEALE SGSIHLGAPD GPMLKIDSLP YPLLEI