| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0929 |
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| Symbol | |
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| ID | 5052502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 924498 |
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| End bp | 928040 |
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| Gene Length | 3543 bp |
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| Protein Length | 1180 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640471089 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001155709 |
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| Protein GI | 145589112 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.574552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGACG CATTAAAACT TGCACCCCCC ATACCCGCCC CGCGGGCTGG GCAGCGCTTT
ACCTTTTCAG GGCTGGTCGG ATCGGCTGAT GCAGCCCTCT TAGCCCAAAC TGCCCTACGC
TATCGCAATG AGTTTTCAGT AATGGTGGTG TTCTGTGCCC AAGCACAAGA GGCGCAACGC
TTAGCCGACG AAATTCCTGC TTTTGCCCCT CAGCTGAAGG TTCGCTTGCT TCCCGACTGG
GAAATACTCC CTTACGACCA TTTTTCCCCA CATCAAGATT TGGTGTCTGA ACGTTTGGCC
ACCTTGTATG AGCTATTAAA TGGTAGTTGC GACATAGTCT TGGTACCAGT CACCACGGCC
CTTCAGAGAT TAGGTCCGCC CCAATTTTTA TCTGGGCATA CTTTTTTCTT CAGACAAGGT
GACAAGCTAA ATGAGTCCGC ACTGCGGTTG CAATTACAAC AAGCAGGCTA CGACCCAGTC
AGCGCAGTCC TGCGACCTGG CGAATACAGC ATCCGAGGCG GCTTAATTGA TTTATTCCCA
ATGGGGTCCA ACCTCCCTTA TCGCCTCGAC TTATTTGGTG ACGAGATTGA GCAAATCAGA
GCTTTTGATC CTGATACGCA ACGTAGCCTA TACCCAGTAA AAGAAGTTCG GCTTTTGCCG
GGTCATGAGT TCCCCTTTAA TGATGAAGCA CGTACTTCAT TCAGAAGCCG TTGGCGAGAA
GTCTTTGAAG GTGATCCTAC TCGTTGCTCC ATTTACAAAG ATGCAAACCT AGGCATCCCG
AGCGCTGGAA TTGAGTCTTA CCTACCACTG TTCTTTGAGG AACAGTCAAC CTTATTTGAT
TACTTTCCCC GGTCTGGCGA TCCCGTATGG CTGGTAAGCA TTGGCAATGT TGAGGAATCC
ATTCGCGGCT TCTGGAAAGA CACTCTGTCG CGTTTTGAAT TTCTAAAGCA TGATTTAGAT
CGACCCATTC TTCCGCCTAA AGACTTATTT CTTGATGTTG ATGATTTTTT CACCACCGCC
AAGCCCTATG CACGTCTATT ACTAGAAAAT GAATCGGCAG CAGCAAATCA ATTTTTACCT
GTTCCAGATA TTGCCATTCA TCGTCGTGAT GCTGATCCCA TCTCCCGTCT ACGTGCAGTA
GTAGCGCAAC AGAAGCTACG GGTTTTAATC TGCAGCGATA GCGCGGGTCG CAAGGAGTCT
ATTCGACAAC TTCTTGATGA AAGTAATTCA GTTGCCGGCA TAGACGGTAA GCCTCTTTAC
GCCTTAAAAC CAGAGGGCTT TGATAGCATT GCTGATTTTG TTAAAAGTGA TTCTCTATTC
GGATTAGTAA CAGCTCCACT TTTTAATGGT TTCTTGTGGT CGGCTGAAAA TTTATTAGTA
CTTACCGAAG CAGAATTATT CACCTCTACG GCAAGACAAC GCAAAAAAAG CAAGGGATCA
GAAAATGCTG ATCCTGATAT GCTATTTAAG GACTTGTCCG AACTCAAAAT TGGCGATCCT
GTAGTTCACG CTGAACATGG TATTGGTCGC TACCAAGGTT TAGTTTTGCT TAATCTTGCG
CCACCAAAAG AAGCGCCTAT TTTTGAAGAG TTCTTGCATT TGCAATATGC CGGACAAGCC
ACTCTCTATG TTCCTGTACA GCAGCTTCAA ATGGTTACTC GATATGCAGG CTCAGATCCT
GACTCTGCCC CTCTGCATCA ACTAGGCTCA GGTCAGTGGG ATAAAGCCAA GCGTAAAGCA
GCCCAACAAA TTCGTGACAC AGCAGCTGAA CTCCTAGGCC TTTATGCAGC GAGAGCAATA
CGCAAAGGAC ATGCTTTTGA ATTTTCGGCA CACGACTACG CTGCATTTTC TGAAAGCTTT
GGTTTCGAAG AGACGCCAGA TCAGGCTAAT GCGATTGCTG CCGTCATTGG CGATATGACT
AGTGGAACGC CAATGGATCG ACTGGTGTGT GGTGACGTTG GGTTTGGAAA AACTGAAGTT
GCCTTAAGGG CGAGTTTTGT TGCTGTAATG GGCGGCAAAC AAGTGGCCAT TCTTGCCCCC
ACCACATTAC TTGCAGAGCA GCATGTTGCT ACATGGAAAG ATCGTTTTGC CGATTGGCCG
GTGCGTATAG TTGAATTATC CCGCTTCAAA ACTACTAAAG AAATTAATGC TGCTCTTGAG
GCCATCGCCA AAGGTGATGC GGACATCATT ATTGGTACGC ATAAACTGCT ATCAAAAGAA
ACGCAATTTG CTAATTTAGG CTTAGTCATA GTAGACGAAG AGCATCGCTT TGGCGTGCGT
CAAAAAGATG CACTAAAGGT ATTGCGTGCT GAGGTCGATA TTCTGACTCT GACAGCAACA
CCTATCCCTA GAACTCTCGG AATGGCAATG GAAGGTCTGC GTGAGCTCTC CATCATCGCC
ACGGCACCAC AAAAACGCTT GGCCATTAAA ACCTTTGTGC GACGTGAAGG TGATGGGGTT
ATTCGGGAAG CGGTATTACG TGAAATTAAG CGCGGTGGTC AAGTCTACTT CTTACATAAT
GAAGTAGAAA CCATCCAGAA TCGGAAGCAT GCCTTGCAAG AACTGATTCC TGAAGCGCGT
ATTAGCGTGG CTCATGGTCA AATGCATGAG CGTGAGCTTG AATCCGTCAT GCGTGAGTTT
GTAACCCAGC GAACCAATAT TTTGTTGTGC ACAACTATTA TTGAGACTGG CATTGATGTG
CCCACAGCAA ATACCATCAT CATGCATCGA GCCGATAAAT TTGGCTTAGC TCAATTACAT
CAATTACGGG GTCGCGTAGG CCGCTCACAC CATCAAGCTT ATGCATATTT ATTAGTTCCA
GATCCTGAGG CTTTAAGCAA ACAAGCTCAG CTGCGCTTAA ATGCTATCCA AGCAATGGAG
GAATTGGGTT CTGGCTTCTA TTTAGCGATG CATGATTTAG AAATTCGTGG AGCCGGAGAA
GTATTAGGAG ATAAACAATC TGGCGAGATT CATGAAATAG GTTTTCAGCT ATATACAGAA
ATGTTGAATC GCGCCGTTAA ATCACTGCGT AGCGGTAAGG AGCCTGACCT ACTGTCCCCA
CTACAGGCAA CCACAGACGT GAATCTCGGA GTACCAGCCC TATTTCCAGA GGATTATTGC
CCTGACGTTC ACGAACGTCT GTCGCTATAT AAACGTTTTG CGGGATGTAA TGATTTTTCA
GAGCTTATGG GGTTACGGGA AGAATTGGTT GATCGTTTTG GGGATTTGCC AGATCAAGCA
AAATCGTTTT ATGAAACCCA TCGTTTGCGA TTAGAAATGA TTGGTTTTGG CATCAAGAAG
ATTGATGCCA CACCCGCATC AATTCAGATC CAATTTATCC CCAATCCCCC AATTGATCCT
CTGAAGATTA TTCAATTAAT TCAATCTTCA AAGCATATTC AACTCAACGG CCAGGATAAA
CTCAAAGTAC TACCCCAGAA AGAACGTGAA TTCGAGAAGC TGGAACAACG CCTTGATGCT
ATACGCAATA TTTTGCGACG CCTCAATGAA TCAGCTGTAC TCAGTAGCGC CAAAGCCAAT
TAG
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| Protein sequence | MSDALKLAPP IPAPRAGQRF TFSGLVGSAD AALLAQTALR YRNEFSVMVV FCAQAQEAQR
LADEIPAFAP QLKVRLLPDW EILPYDHFSP HQDLVSERLA TLYELLNGSC DIVLVPVTTA
LQRLGPPQFL SGHTFFFRQG DKLNESALRL QLQQAGYDPV SAVLRPGEYS IRGGLIDLFP
MGSNLPYRLD LFGDEIEQIR AFDPDTQRSL YPVKEVRLLP GHEFPFNDEA RTSFRSRWRE
VFEGDPTRCS IYKDANLGIP SAGIESYLPL FFEEQSTLFD YFPRSGDPVW LVSIGNVEES
IRGFWKDTLS RFEFLKHDLD RPILPPKDLF LDVDDFFTTA KPYARLLLEN ESAAANQFLP
VPDIAIHRRD ADPISRLRAV VAQQKLRVLI CSDSAGRKES IRQLLDESNS VAGIDGKPLY
ALKPEGFDSI ADFVKSDSLF GLVTAPLFNG FLWSAENLLV LTEAELFTST ARQRKKSKGS
ENADPDMLFK DLSELKIGDP VVHAEHGIGR YQGLVLLNLA PPKEAPIFEE FLHLQYAGQA
TLYVPVQQLQ MVTRYAGSDP DSAPLHQLGS GQWDKAKRKA AQQIRDTAAE LLGLYAARAI
RKGHAFEFSA HDYAAFSESF GFEETPDQAN AIAAVIGDMT SGTPMDRLVC GDVGFGKTEV
ALRASFVAVM GGKQVAILAP TTLLAEQHVA TWKDRFADWP VRIVELSRFK TTKEINAALE
AIAKGDADII IGTHKLLSKE TQFANLGLVI VDEEHRFGVR QKDALKVLRA EVDILTLTAT
PIPRTLGMAM EGLRELSIIA TAPQKRLAIK TFVRREGDGV IREAVLREIK RGGQVYFLHN
EVETIQNRKH ALQELIPEAR ISVAHGQMHE RELESVMREF VTQRTNILLC TTIIETGIDV
PTANTIIMHR ADKFGLAQLH QLRGRVGRSH HQAYAYLLVP DPEALSKQAQ LRLNAIQAME
ELGSGFYLAM HDLEIRGAGE VLGDKQSGEI HEIGFQLYTE MLNRAVKSLR SGKEPDLLSP
LQATTDVNLG VPALFPEDYC PDVHERLSLY KRFAGCNDFS ELMGLREELV DRFGDLPDQA
KSFYETHRLR LEMIGFGIKK IDATPASIQI QFIPNPPIDP LKIIQLIQSS KHIQLNGQDK
LKVLPQKERE FEKLEQRLDA IRNILRRLNE SAVLSSAKAN
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