| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0927 |
|---|
| Symbol | |
|---|
| ID | 5052838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 922362 |
|---|
| End bp | 923546 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640471087 |
|---|
| Product | beta-ketothiolase |
|---|
| Protein accession | YP_001155707 |
|---|
| Protein GI | 145589110 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0480332 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGTG ATGTCGTTGT CTTAAGTGCA GTTCGTTCCG CAATTGGCAC CTTTAATGGT
TCCCTCAGTA GTTTCGAGCC TTCAGAGCTT GGTGGAATCG TCATGAAAGA AGCAGTCGCT
CGCTCCGGTG TGGATCCTGC TTTGATTAAT TATGTGACTG TTGGAAATAC GATTCCAACA
GATAGTCGTT ATGCCTATGT TGCGCGTGTT GCATCCATTC AAGCTGGCTT ACCAATGGAA
TCTGTCGCAA TGGCATTGAA TCGATTGTGC AGCTCTGGCT TACAAGCAAT TGTGACCACA
GCACAACAAA TTATGTTGGG TGACTGCGAT TACGGTATTG GTGGCGGTGT TGAGGTGATG
TCACGCGGCA TGTATGGTTC ACCAGCGATG CGCAGTGGAG CGCGTATGGG CGATACCAAG
ATGCTTGACT TGATGGTGGC TGTTTTGACT GATCCATTTG GTGTTGGTCA TATGGGTGTT
ACAGCAGAGA ACCTAGTTGA AAAATGGAAG CTTACACGTG AAGAGCAAGA CGCCTTGGCG
GTTGAATCTC ATCGTCGTGC TGCCAATGCA ATTAAAGAAG GTCGTTTCAA ATCTCAAATC
GTCCCTATTA CGATTAAGTC CCGCAAAGGC GATGTAGTTT TTGATACTGA TGAACATTGC
AAGCCAGAAA CCACAATGGA AACATTGGGC AAGATGAAGG CTGTATTCAA AAAAGAAGGT
GGCTCTGTTA CAGCTGGCAA TGCTTCAGGA ATTAACGACG GTGCTGCATT CTTTGTTTTG
GCCGATGCTG AAACAGCCAA GAAAGCTGGT CATAAGCCGA TTGCACGCTT GGTGTCTTAC
GCAGTTGCAG GTGTGCCAAA CCACATCATG GGTGAAGGTC CTATTCCTGC GACTAAGATT
GCGCTTGAGC GTGCTGGGTT GAAATTGGAG CAAATCGATG TCATTGAATC CAATGAAGCT
TTTGCTGCAC AAGCATTGGC GGTAACAAAA GGCTTGGGCT TAGATCCAGC CAAGACAAAC
GTAAATGGTG GTGCAATTGC TTTAGGTCAC CCAATTGGTT GTTCTGGCGC AGCTATTGCC
ACTAAAGCTA TCCATGAATT ACACCGCGTG CAAGGTAAAT ACGCTTTGGT AACCATGTGT
ATTGGTGGTG GCCAAGGTAT TGCTACTATT TTCGAGCGCC TATAA
|
|---|
| Protein sequence | MSRDVVVLSA VRSAIGTFNG SLSSFEPSEL GGIVMKEAVA RSGVDPALIN YVTVGNTIPT
DSRYAYVARV ASIQAGLPME SVAMALNRLC SSGLQAIVTT AQQIMLGDCD YGIGGGVEVM
SRGMYGSPAM RSGARMGDTK MLDLMVAVLT DPFGVGHMGV TAENLVEKWK LTREEQDALA
VESHRRAANA IKEGRFKSQI VPITIKSRKG DVVFDTDEHC KPETTMETLG KMKAVFKKEG
GSVTAGNASG INDGAAFFVL ADAETAKKAG HKPIARLVSY AVAGVPNHIM GEGPIPATKI
ALERAGLKLE QIDVIESNEA FAAQALAVTK GLGLDPAKTN VNGGAIALGH PIGCSGAAIA
TKAIHELHRV QGKYALVTMC IGGGQGIATI FERL
|
|---|
| |