Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0921 |
Symbol | |
ID | 5053232 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 915977 |
End bp | 916933 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640471081 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001155701 |
Protein GI | 145589104 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGGTG AACGCCTGGA CAAGGTGTTG GCTGGATCTT TGCCTGATTA TTCCCGTAAT CGGCTCAAGG CTTGGGTTGA AGCTGGCGCA GTTATGGTTG ATGGAAAAGT CACCAAAGCC AGATATTTAT TGAGGGGGGG CGAGAGTGTT AAGGTATTTC CTCAAGAAAT GCCTGAACAA TTTGCCTTTA GCCCCGAAAA CATCCCTTTG GAGGTGGTTT ACGAGGATGA CTCCATCATT GTGATTAACA AGCCGCCGGG ATTGGTGGTA CATCCTGCTG CAGGCAACTG GTCAGGCACC TTATTAAATG GCCTCTTACA CCGTTTTCCA GAGTTAAAGT CTCTGCCACG CGCAGGTATT GTTCATCGTC TCGATAAGGA TACGTCAGGA CTAATGGTAG TGGCACGTAC CGCTCACGCC CAAACCGCAT TGGTTAGGCA GTTGCAAGAG CGAACGGTGG GTCGAAGATA TCTAGCTTGG GTTTGGGGTG ATGCGCCCAG CCAGGGCAAG GTGTTGGCCT CGGTAGGTCG TGATCAACGA GATCGCTTAA AAATGGCTGC TGGCAGTCCT CAGGGTAAGC CGGCGGCTAC TTTGTTTAGA CGAATCGCTA AAGGAAACGT AGAAAATGCT CCAGTGGCTT TATTGGAGTG TCGTTTGGAA ACAGGGCGAA CCCATCAAAT CCGCGTTCAT CTTGAGTCTT TAGGGTTTCC TTTGGTGGGT GACCCGGTAT ATCGCAAGAA AGCGCCGGGA GTTGCCAAAG CCCTATCCTT TGATCGTCAG GCGCTACATG CTTTTGCTCT GAGCCTACAG CATCCCGTTA CCCAAGAATT GCAAACTTGG TTTCGTTTGC CACCCGTTGA TCTAATTAAC CTACTACCTC AAGTCGGCAT GTCCACGCAT GATTTGCCTG AAGAAGGGGT TGTCTTAGCA TCTATCAAGA ATGAAGTACG GGCATGA
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Protein sequence | MAGERLDKVL AGSLPDYSRN RLKAWVEAGA VMVDGKVTKA RYLLRGGESV KVFPQEMPEQ FAFSPENIPL EVVYEDDSII VINKPPGLVV HPAAGNWSGT LLNGLLHRFP ELKSLPRAGI VHRLDKDTSG LMVVARTAHA QTALVRQLQE RTVGRRYLAW VWGDAPSQGK VLASVGRDQR DRLKMAAGSP QGKPAATLFR RIAKGNVENA PVALLECRLE TGRTHQIRVH LESLGFPLVG DPVYRKKAPG VAKALSFDRQ ALHAFALSLQ HPVTQELQTW FRLPPVDLIN LLPQVGMSTH DLPEEGVVLA SIKNEVRA
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