Gene Pnuc_0910 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0910 
Symbol 
ID5051958 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp903188 
End bp905407 
Gene Length2220 bp 
Protein Length739 aa 
Translation table11 
GC content46% 
IMG OID640471070 
Productmethylmalonyl-CoA mutase 
Protein accessionYP_001155690 
Protein GI145589093 
COG category[I] Lipid transport and metabolism 
COG ID[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) 
TIGRFAM ID[TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.736612 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATGCA ACAAAACAAT CAGGGAGTGC TTTGTGAGTT CAGACAAGAA AAGTTCATCA 
ACCAATCCAT GGCCATCATT TCCAGAAACG AATCTGGACG CTTGGAATAA ATCAGCGCAA
AAATCTGCCC CTAATGGCGA CGTAGATAAG CTTGGTTGGA ATACACCTGA CGGTATTCAA
TTAAAAGCCT TATACACCTC TGCAGATACA CAGGATCTGA ATTACACAAA TACATTGCCA
GGATTCGAAC CTTTTGTACG CGGACCCCAA GCAACAATGT ATTCCGTGCG TCCATGGACG
ATTCGTCAAT ACGCTGGATT TTCAACTGCT GAAGCATCAA ATGCTTTTTA CCGTGAAGCA
TTAGCTGCTG GCGGCCAAGG CGTTTCAGTT GCATTTGATT TGGCGACGCA CCGCGGTTAT
GACTCAGACC ATCCTCGTGT AGCAGGTGAT GTTGGTAAAG CTGGCGTCGC AATTGACTCA
GTTGAAGATA TGAAAATTTT ATTTAACGGC ATTCCGTTAG ATAAGGTTTC TGTCTCAATG
ACTATGAATG GTGCTGTGCT ACCTGTGCTA GCCGGCTACA TCGTTGCGGG TGAAGAACAA
GGCGTAAAGC AAGAAGCGCT TTCTGGAACC ATACAGAATG ACATTCTGAA AGAGTTCATG
GTGCGCAACA CCTATATCTA CCCACCAGAG CCATCAATGC GCATCATTGG TGACATCATT
GAATATACGG CAAAAAATAT GCCGAAATTT AACTCGATCT CGATTTCGGG TTATCACATG
CAAGAAGCTG GCGCAAACCA GGTATTGGAA TTAGCGTTCA CCTTAGCCGA CGGAAGAGAG
TATGTGAAGA CTGCGCTTGC CAAGGGTATG GACGTGGATG GCTTTGCGGG ACGCCTGTCA
TTCTTCTTTG CTATTGGTAT GAACTTCTAT TTAGAAGTTG CCAAATTACG TGCCGCTCGT
TTGTTGTGGT GGCGCATTAT GAAATCCTTT GAGCCAAAAA ATCCAAAGTC GTTGATGTTG
CGCACACACT GTCAAACTTC AGGTTGGTCT TTGACAGAGC AAGACCCCTA CAACAATGTA
GTGAGAACGA CTGTTGAGGC AATGGCTGCT GTATTTGGCG GCACTCAGTC TTTGCATACC
AATTCATTGG ATGAAGCAAT TGCTTTGCCA TCTGAATTCT CAAGTCGCAT TGCACGTAAT
ACCCAATTAA TTTTGCAGGA AGAGACTCAT ATCACTAGCG TGATCGACCC TTGGGCTGGT
TCCTACATGA TGGAGAGTTT GACTCAAGAG ATGGCCGATA AAGCCTGGGA AATTATTCAA
GAAGTTGATT CCATGGGTGG CATGATTAAG GCAGTCGAAA GTGGTTGGGC CAAGCTCAAG
ATCGAGGCCG CCGCAGCTGA AAAACAAGCC AAAATTGACT CGGGTTCAGA TGTCATCGTT
GGTGTTAATA AATACAAGCT AGCCAAAGAA GATCTCGTTG ATGTGTTAAT GATTGATAAC
GAGATGGTTC GCGAAGGGCA AGTAGCACGT CTTAAAGAAA TCAAAGCTAA GCGTGATACT
CAAAAAGTTG AAGCCGCATT AGATGCACTT ACTAAAGCCG CGGAAGATCA CACCGGTAAC
TTATTAGAGT TATCAGTCAA TGCTATTCGT TTGCGCGCTA CAGTAGGTGA GGTATCTGAT
GCATTAGAAA AGGTTTACGG GCGCCATCGC GCCGATACTC AAAAGGTGAC CGGTGTGTAT
GCAGCCGCTT ATGACTCAGC TGAAGGTTGG GCAAAACTTC AAACAGAAAT CGCTGATTTT
GCAAAAGATT TTGGTCGTCG CCCCCGTGTG ATGATTGCTA AGCTCGGTCA GGATGGGCAT
GACCGCGGCG CTAAGGTTGT GGCTACCGCT TATGCGGACT TAGGGTTTGA CGTTGATATT
GGCCCCTTAT TTCAAACTCC TGAAGAGTGC GCTCGTCAGG CCATTGAAAA TGACGTTCAT
GCATTAGGCG TCTCAACATT AGCTGCTGGG CATAAAACGC TTGTTCCCGC CATCATTGCA
GAGCTGAAAA AACAAGGCTC GGACGACATT ATCGTTTTCG TTGGCGGTGT CATTCCAAGG
CAGGATTACG AGTTTCTCTA CGAGGCAGGG GTCAAAGGTA TTTATGGCCC AGGAACACCA
ATTCCAGCTT CTGCAAAAGA TGTACTTGAG CAGATTCGTA AATCAATGAA ACCAGTTTAA
 
Protein sequence
MQCNKTIREC FVSSDKKSSS TNPWPSFPET NLDAWNKSAQ KSAPNGDVDK LGWNTPDGIQ 
LKALYTSADT QDLNYTNTLP GFEPFVRGPQ ATMYSVRPWT IRQYAGFSTA EASNAFYREA
LAAGGQGVSV AFDLATHRGY DSDHPRVAGD VGKAGVAIDS VEDMKILFNG IPLDKVSVSM
TMNGAVLPVL AGYIVAGEEQ GVKQEALSGT IQNDILKEFM VRNTYIYPPE PSMRIIGDII
EYTAKNMPKF NSISISGYHM QEAGANQVLE LAFTLADGRE YVKTALAKGM DVDGFAGRLS
FFFAIGMNFY LEVAKLRAAR LLWWRIMKSF EPKNPKSLML RTHCQTSGWS LTEQDPYNNV
VRTTVEAMAA VFGGTQSLHT NSLDEAIALP SEFSSRIARN TQLILQEETH ITSVIDPWAG
SYMMESLTQE MADKAWEIIQ EVDSMGGMIK AVESGWAKLK IEAAAAEKQA KIDSGSDVIV
GVNKYKLAKE DLVDVLMIDN EMVREGQVAR LKEIKAKRDT QKVEAALDAL TKAAEDHTGN
LLELSVNAIR LRATVGEVSD ALEKVYGRHR ADTQKVTGVY AAAYDSAEGW AKLQTEIADF
AKDFGRRPRV MIAKLGQDGH DRGAKVVATA YADLGFDVDI GPLFQTPEEC ARQAIENDVH
ALGVSTLAAG HKTLVPAIIA ELKKQGSDDI IVFVGGVIPR QDYEFLYEAG VKGIYGPGTP
IPASAKDVLE QIRKSMKPV