| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0868 |
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| Symbol | |
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| ID | 5053210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 861113 |
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| End bp | 862693 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640471026 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001155648 |
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| Protein GI | 145589051 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGGAC CAGATTTTTC AAGACCATCG GTGAAGGCTG GTGATCAATA TCAGGCAACT
GCGAAAACCC AATTTACAGA ATCGCTGGGC GAAAACTCTA ATCAAATTTT AGATCCCGTA
GAGTGGTGGC AAAGTTTCAA TGATCCTACC CTCAATGCAT TACTCAAGCA GGCTGCGTCT
CAAAACCTAA CACTCCAACA AGCGGCTATA CGAATCTATC AGTTACAGGC GCAACTTGGG
GTAACTGATG CAACCATATT GCCAACCGTT GCGCTGAGTG GTTCTTATGC CAACACCCGC
AATAGCAATT TGCAAGAAAT TACCAATAGC CCCGGCAACC TGGTATTTAA CAATGCCGTA
GTTCAACTCA ATTGGGAATT AGATTTTTGG GGTAAAGCTA GGCGCGGCAT TGAAAGTTCT
TTGAACTCCT ATATGTCTGG AGTGGCTGCT TTTTATTCGG CTGATGTTTC TATTAGTGCG
GACGTCGCAA ATACCTATAT CAATATCCGT AATAACGAAG AGCTGATCGC GGTCGCCACA
ACAAATCTTG CGCTGCAAAA GGAAAGCTTG CGTATTGCAG GCGCACGATT TAAGTATGGT
GCGACCTCTA TGTTAGATCT TAGCCAAGCC CAGGCGCAGT ATGAGCAAAC TAAGGCGCAG
ATCCCAGCTT TGATTGCGAG CCTCAAGAAA ACACAACACG CCATGAGTAT TTTATTGGGC
GAACCTCCAG ATTATTATGA GAAAACCTAC GGCAATACCA AGGGTTCACT TAAGCCACCA
ACCGAGTTAG GCGTGGGTAT GCCAAGGGAT TTATTGCGCC GCCGCCCAGA TGTACTACAA
GCTGAATTTG CTGCGGCAGC CCAATCCTCT TTGATCGGTG TTAATAAAGC ACAACTTTTC
CCCACCTTTA CCTTGGGGGG CAATTTTGGA TATGCAAACT CTAATTTTGG TGGTGGATCT
ACAGGTAGTT TATTTAGCTG GGCGAATAAC TCAACTGGTA TTTCAGCCGG CCTCTCTTTA
CCCTTGTTTT ATCGAGGCGC AATAGTCGAT CAGGTACGCG TACAAGATGC CGTATTCCAG
CAAAGTATTT TGGCATATCA AAATCTAGTT CTTAACGCGC AAAAAGAGGT TGAGGATTCC
CTTATCGCAA TTTCAACCTC TAAGAGTTCT GTGGAAGACT ATACCCGCGG GGTTATTGCT
GCCAAGAGTG CCGCTGATAT GGCTTTAGAG CGATATAAAG CTGGCCAAAA TGACTACAAC
ACAGTGATCG TTGCTCAGCA ATCATTATTG AGTATTCAAA ACTCTTTAGT GCAAACAAAG
TCCAACGAGC TTATCGGATA TGTCGGCGCA TTTAAGGCGC TAGGGGGCGG CTGGTCTGCT
GATATGACGC CGCCTAAATT ACCTGTAAGC ACTGTTGCTG AAATGACTGA ACGTACAGAT
TGGGGTAATG TCCTCACAAA GACTGGTGAA CCGCTGAATG TTCAAACTGG CAAGTTGCTT
CTGCCGAAAC AAGATGCTCC CGCTGAAGGG CTAGCTCCAA TTAAATCTAC AACACCGACT
CAGGGAAGTG CTGCGCCATG A
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| Protein sequence | MVGPDFSRPS VKAGDQYQAT AKTQFTESLG ENSNQILDPV EWWQSFNDPT LNALLKQAAS
QNLTLQQAAI RIYQLQAQLG VTDATILPTV ALSGSYANTR NSNLQEITNS PGNLVFNNAV
VQLNWELDFW GKARRGIESS LNSYMSGVAA FYSADVSISA DVANTYINIR NNEELIAVAT
TNLALQKESL RIAGARFKYG ATSMLDLSQA QAQYEQTKAQ IPALIASLKK TQHAMSILLG
EPPDYYEKTY GNTKGSLKPP TELGVGMPRD LLRRRPDVLQ AEFAAAAQSS LIGVNKAQLF
PTFTLGGNFG YANSNFGGGS TGSLFSWANN STGISAGLSL PLFYRGAIVD QVRVQDAVFQ
QSILAYQNLV LNAQKEVEDS LIAISTSKSS VEDYTRGVIA AKSAADMALE RYKAGQNDYN
TVIVAQQSLL SIQNSLVQTK SNELIGYVGA FKALGGGWSA DMTPPKLPVS TVAEMTERTD
WGNVLTKTGE PLNVQTGKLL LPKQDAPAEG LAPIKSTTPT QGSAAP
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