| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0773 |
|---|
| Symbol | trpA |
|---|
| ID | 5052358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 773621 |
|---|
| End bp | 774418 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470930 |
|---|
| Product | tryptophan synthase subunit alpha |
|---|
| Protein accession | YP_001155555 |
|---|
| Protein GI | 145588958 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0621096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAA TAACTGCACT CTTTAAAGAG CTCAAAGCAA GCGGAAAGAA GGGATTGATT
CCCTTCATTA CTGCCGGTGA TCCTGATCCC AAATTAACCG TGGAATTAAT GCATGCACTC
GTGCGTGGTG GCTCTAGCGT AATTGAATTG GGCGTGCCAT TCTCTGATCC GATGGCTGAT
GGTCCCGTGA TACAGAGATC TTCTGAGCGT GCTTTGACAC AGGGAGTTAC TTTACATAGC
TGCCTAGACA TGGTGAAAGA GTTTCGCAAA AAAGATGCAA CGACTCCAGT CGTTTTAATG
GGATATGCAA ATCCTGTTGA GCAAATGGGT GCAGAGAGAT TTGCAACCGA AGCAAAAGCA
GCTGGGGTAG ATGGAGTCCT GATTGTTGAC TATCCGCCTG AGGAATGCGT TGATTTTGCG
GCACGCATGC GTGTTGCAGG AATTGACCCG ATTTTCTTAT TAGCGCCAAC TTCATCCCAT
GAGCGCATTA AAGAGGCTGC CAAAATAGCT TCTGGTTATA TCTATTACGT TTCCATGCGT
GGTGTAACAG GCGCTTCCCA TCTCAATACC CAGGATGTAG CCAGCATCAT CCCTAAAATT
CGGGAAGAAA CCGATATTCC TATCGCCGTA GGCTTTGGAA TTAACGATGC AGCAAGTGCC
AAGGCTGTTT CAGTCAGCGC TGACGCAGTG GTCATAGGGA GCCGGATTAT TCGCCTTTTG
GAGGATGCAC CCCCTGGGCA GGCAGTACAA TCATTGGAAA CCTTCATTCG TGAGATTCGC
GACGCATTGG ATAGTTAA
|
|---|
| Protein sequence | MSKITALFKE LKASGKKGLI PFITAGDPDP KLTVELMHAL VRGGSSVIEL GVPFSDPMAD
GPVIQRSSER ALTQGVTLHS CLDMVKEFRK KDATTPVVLM GYANPVEQMG AERFATEAKA
AGVDGVLIVD YPPEECVDFA ARMRVAGIDP IFLLAPTSSH ERIKEAAKIA SGYIYYVSMR
GVTGASHLNT QDVASIIPKI REETDIPIAV GFGINDAASA KAVSVSADAV VIGSRIIRLL
EDAPPGQAVQ SLETFIREIR DALDS
|
|---|
| |