Gene Pnuc_0772 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0772 
Symbol 
ID5052356 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp772377 
End bp773570 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content47% 
IMG OID640470929 
Producttryptophan synthase subunit beta 
Protein accessionYP_001155554 
Protein GI145588957 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0133] Tryptophan synthase beta chain 
TIGRFAM ID[TIGR00263] tryptophan synthase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.482746 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACGACA AGCCAGATGC AAGAGGACAT TTTGGTCCTT ACGGCGGCGT GTTTGTTTCT 
GAGACATTGA TGTATGCATT AGAGGAACTC AAAGAAGCCT ATGCAAAATA TCAACACGAT 
CCAGAATTTA TTGAAGAGTT TCATTACGAG TTAAAGCACT TTGTTGGTAG ACCTTCTCCG 
GTGTATCACG CAAAACGTTG GAGCGAAATG CTTGGCGGGG CGCAAATCTA TTTAAAGCGT 
GAAGACTTAA ACCACACTGG TGCCCATAAG ATTAATAACG TAATTGGTCA AGCGATGTTG 
GCCAAGCGTA TGGGTAAGCC CCGCATCATT GCGGAGACTG GGGCAGGGCA ACATGGTGTT 
GCAACGGCAA CTATCTGTGC ACGATTTGGT CTTGACTGTA CTGTCTATCA AGGCTCTGTG 
GACGTCGCAC GTCAAGCTCA AAACGTATAT CGCATGAAAT TACTCGGTGC CAAAGTGGTG 
CCAGTAGAGT CTGGTACTAA AACATTAAAA GATGCGCTCA ATGAGGCAAT GCGTGATTGG 
GTTACTAACG TCGATAACAC TTTCTACATC ATCGGTACTG TTGCCGGTCC ACATCCCTAT 
CCAATGATGG TGCGCGATTT CCAAAGCGTG ATTGGAGAAG AGTGCAAAGT GCAGATGCCA 
GAAATGACTG GGCGTCAACC AGACTTTGTA TTGGCCTGTG TTGGCGGTGG TTCAAATGCC 
ATGGGTATTT TTTACCCATA CATCGATTTC CCGGAAGTGA AATTAGTAGG CGTAGAAGCT 
GCAGGTCATG GCTTGGGTAG TGGTTTGCAT TCAGCGGCTC TGTGTGTCGG TAAGCCTGGT 
GTCTTGCATG GCAATCGGAC TTACTTACTC CAAGATGAGA ACGGTCAGAT TTCTGAAACG 
CATTCTGTTT CTGCTGGTAT GGATTACCCC GGTGTTGGTC CTGAGCATGC ATGGTTAAAA 
GACTCTGGTC GTGCTGACTA TGTAGCCATT ACCGACGAGG AAGCTCTAAA AGCCTTCCAT 
GATTGCTGTC AGATTGAAGG CATCATTCCT GCGCTGGAGT CAGCCCATGC TATTGCCTAT 
GCCTGCAAGT TGGCCAAGAC TTTGCCTAAA GATAAAACCA TTTTGGTGAA CCTTTCTGGT 
CGTGGCGATA AGGATATGCA TACCGTTGCT CAGGCAACTG GTTCTGAAGG CTAG
 
Protein sequence
MYDKPDARGH FGPYGGVFVS ETLMYALEEL KEAYAKYQHD PEFIEEFHYE LKHFVGRPSP 
VYHAKRWSEM LGGAQIYLKR EDLNHTGAHK INNVIGQAML AKRMGKPRII AETGAGQHGV 
ATATICARFG LDCTVYQGSV DVARQAQNVY RMKLLGAKVV PVESGTKTLK DALNEAMRDW 
VTNVDNTFYI IGTVAGPHPY PMMVRDFQSV IGEECKVQMP EMTGRQPDFV LACVGGGSNA 
MGIFYPYIDF PEVKLVGVEA AGHGLGSGLH SAALCVGKPG VLHGNRTYLL QDENGQISET 
HSVSAGMDYP GVGPEHAWLK DSGRADYVAI TDEEALKAFH DCCQIEGIIP ALESAHAIAY 
ACKLAKTLPK DKTILVNLSG RGDKDMHTVA QATGSEG