| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0695 |
|---|
| Symbol | |
|---|
| ID | 5053456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 693917 |
|---|
| End bp | 695755 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640470851 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_001155477 |
|---|
| Protein GI | 145588880 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAATCGA GCCACCAAGT ACTTCATGAT GTTTTTGGCT TTGATCAATT TCGCGGTGCT
CAAGAGTCTA TTGTTGAGCA TGTAGTTGCG GGCGGCGATG CTTTGGTCCT CATGCCGACT
GGTGCCGGTA AGTCCCTGTG CTATCAAATT CCTTCGCTTA TTCGGCGCGG AGTGGGGGTG
GTGGTTTCAC CCTTAATTGC ACTGATGCAG GACCAAGTCG ATGCGTTAAC CCAGTTGGAC
GTGAAAGCTT CATTTCTGAA CTCTAGTCTG GATGCAGCTA CAGCTCAAAA AGTGACCAGT
CAGTTGCTGG CTGGAGATCT TGACTTAATT TATGTGGCAC CTGAACGTCT TATGAATCCA
GGCTTTCTAT CAATACTCGA TAGACTCAAC GAGGGTCCTG GAATAGCATT ATTCGCGATT
GATGAGGCGC ACTGTGTTTC TCAATGGGGA CATGATTTCC GGCCTGAGTA TCGTCAGTTA
ACGGTGTTAC ATGAGCGCTT TCCTGCCGTC CCTCGTATTG CTTTAACTGC CACCGCCGAT
GCACCCACAA GGGCAGAAAT TGTTGAACGA CTCTCCTTGG AATCTGCACA TCAATTTGTA
TCAAGTTTTG ATCGTCCAAA CATTCGCTAT CGGGTCTTGC AAAAGCAGAA CGCCAAGCAG
CAACTTGAAC ATTTTTTAGA TGCAGAACAT CCCAATGATT CTGGAATCAT TTACTGCTTA
TCGCGCCGTA GCGTTGAAGA TACTGCGCAA TGGTTGCAAG ATAGGGGCTG GGATGCCATG
CCGTATCACG CAGGATTAAG CCAGGAAGTG CGTAGCGCTA ATCAAAAGCG CTTTTTACGA
GAAGAAGGCG TCATTATGGT TGCCACGGTG GCCTTTGGCA TGGGCATTGA TAAACCTAAC
GTCCGATTTG TCGCGCATCT CGATCTCCCT AAAAGTATGG AGGGCTATTA CCAAGAAACT
GGCCGGGCTG GCCGTGATGG TTTGCCAGCC AATGCTTGGA TGGTTTATGG ATTGGGTGAT
GTAGTCAGTT TGCGTCAAAT GGTCGATTCG GGAGAGGCTT CGGAAGATCG TAAACGGGTA
GAGCGCCAAA AGCTCAATGC TTTATTAGGA TTTTGTGAGT CTACTGACTG TCGTCATCAA
GGTATCTTGC GCTATTTTGG CGAGGCGCAC CCAGGTAATT GCGGCAACTG CGATAACTGT
TTGGAGCCGG TGGAAACCTG GAATGCCACA CACGAAGTCC AAAAGGCTTT GTCGTGTGTT
TATCGCACGG GACAGCGTTT TGGTGTGACC CATTTGATAG ATGTGCTCCT TGGAAAAGTG
ACTCCGAGAG TGAAGCAATA TTTTCATGAT CAGGTAAGTA CCTTTGGGAT TGGTTCAGAG
CTTAATCAGT CCCAATGGAA TAGCGTCTTT CGTCAATTAG TGGCTGGTGG ATATTTGGAG
GCGGACATCG CTCTCTATGG CGGCCTTAAA TTAGTTGATG CCATTGCGCT TCCAGTACTT
CGTGGTGAGC AAGAGGTGTG CTTGCGCAAA GAGGCTGCTT ATTCCAAAAG CAAGGTTGCT
AAATCAGGGG CTAGCAAGCG CTCTACGCAC CCATTTACCA ATATTGCAGA TGAAAACCTT
TGGGAAGCCC TTAAAGCCAA ACGTACCGAG CTAGCACGCC AACAGGGTGT ACCCCCTTAT
CTGATTTTTC ATGACAGTAC TTTGCAAGAA ATGGTCAAAA GTTCGCCAAT CACCTTAGAT
CAATTTAGTC GAATTGGTGG GGTAGGGCAG GCAAAACTAG AGCGGTATGG GACACACTTT
ATTAAGGTTG TAGAGGCGAC CCTTAAGAGT GACGGCTAA
|
|---|
| Protein sequence | MQSSHQVLHD VFGFDQFRGA QESIVEHVVA GGDALVLMPT GAGKSLCYQI PSLIRRGVGV
VVSPLIALMQ DQVDALTQLD VKASFLNSSL DAATAQKVTS QLLAGDLDLI YVAPERLMNP
GFLSILDRLN EGPGIALFAI DEAHCVSQWG HDFRPEYRQL TVLHERFPAV PRIALTATAD
APTRAEIVER LSLESAHQFV SSFDRPNIRY RVLQKQNAKQ QLEHFLDAEH PNDSGIIYCL
SRRSVEDTAQ WLQDRGWDAM PYHAGLSQEV RSANQKRFLR EEGVIMVATV AFGMGIDKPN
VRFVAHLDLP KSMEGYYQET GRAGRDGLPA NAWMVYGLGD VVSLRQMVDS GEASEDRKRV
ERQKLNALLG FCESTDCRHQ GILRYFGEAH PGNCGNCDNC LEPVETWNAT HEVQKALSCV
YRTGQRFGVT HLIDVLLGKV TPRVKQYFHD QVSTFGIGSE LNQSQWNSVF RQLVAGGYLE
ADIALYGGLK LVDAIALPVL RGEQEVCLRK EAAYSKSKVA KSGASKRSTH PFTNIADENL
WEALKAKRTE LARQQGVPPY LIFHDSTLQE MVKSSPITLD QFSRIGGVGQ AKLERYGTHF
IKVVEATLKS DG
|
|---|
| |