| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0691 |
|---|
| Symbol | |
|---|
| ID | 5053458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 690865 |
|---|
| End bp | 691548 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640470846 |
|---|
| Product | outer membrane lipoprotein carrier protein LolA |
|---|
| Protein accession | YP_001155473 |
|---|
| Protein GI | 145588876 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
|---|
| TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.947793 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAACGAC TTTTCTCCGC GCTTGCCATT GGCATCGCTA GCATCCTGAT TTCAAATGTA
GCTATAGCCG AAGGTGAATC TGGCTCTGAG CAATTGCGTC AATTTGTACG CAACTCAAAA
ACAGCTGAAG GTGATTTTGT TCAACAACAA TTACGTGCGC CTAAAGCAAA TGAGCCACAA
GACAAGGGTT TAAAAGTAGT GCGTCAAACC CAGGGGCAAT TTGTCTTTCA AAGGCCTGGC
CGCTTTGTTT GGGATACACA AAAGCCATAC GAACAAAAGT TGATTACCAA TGGCACTCAA
CTCATTTTGT GGGACAAGGA TTTAAATCAA GCCACGTTTC GTCCTGCAGG ACAAGCTTTG
GCTTCAACAC CTGCCGCTAT ATTGTTTGGC GAATCTTCCT TGGATCAACA TTTTGAGTTA
ATCGATGGTG AAGAGCGACT GGGGATGAAA TGGGTTGCAT TGGTTCCCAA AAAAGATCCG
AACGCTAAGA ACCAAAATGA TTTGCCTTAT ACCAAGATCT CGATTGGCAT GACTAACGGT
CTACCGAAGG CTCTAGAGCT GATTGATGGA CTGGGAAGCG TAGTCTTGGT AACCTTAGAC
AACATAAAGC TAAATGTGAA TTTGCCGGCA AATCGCTTCA ATTTCATCCC CCCTAAAGGC
GCAGAAGTTG TCCGCTTAAA CTAG
|
|---|
| Protein sequence | MQRLFSALAI GIASILISNV AIAEGESGSE QLRQFVRNSK TAEGDFVQQQ LRAPKANEPQ
DKGLKVVRQT QGQFVFQRPG RFVWDTQKPY EQKLITNGTQ LILWDKDLNQ ATFRPAGQAL
ASTPAAILFG ESSLDQHFEL IDGEERLGMK WVALVPKKDP NAKNQNDLPY TKISIGMTNG
LPKALELIDG LGSVVLVTLD NIKLNVNLPA NRFNFIPPKG AEVVRLN
|
|---|
| |