| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0602 |
|---|
| Symbol | |
|---|
| ID | 5052644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 588807 |
|---|
| End bp | 589991 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470755 |
|---|
| Product | Serine--glyoxylate transaminase |
|---|
| Protein accession | YP_001155384 |
|---|
| Protein GI | 145588787 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAAC TTGATAACCA CGCATCTGGC CGCCATTTCT TACATATTCC TGGCCCCAGC
CCAGTTCCTC CGCGTGTACT GCGCGCGATT AGCTATCAAA CCATTGACCA TCGTGGTCCT
GAGTTTGGTC AGTTTGGTCT AAAGGTATTA GATGGCATTA AAAAGATTTT TAAAACAGAG
CAGCCAGTCA TTATTTATTC CGCTTCCGGA ACTGGTTCTT GGGAAGGCGC ATTAGTGAAC
GTGCTCAATC CTGGTGACAA AGTGTTGTTC TATGAGACTG GTCAATTTGC GAACTTATGG
CGTGCGCTTG CAAAACGTCT CGGTTTGGAT GTTGAAGTAG TTGGAAAAGC AGGGCAAGAT
TCTTGGCGTT GGGGTGTGGA TGCTTCTGTC ATTGAAGAGC GTTTACGCAA AGATACACAA
CATGAAATCA AGGCCGTGTG TGTAGTGCAT AACGAAACTT CAACCGGCGT TACTTCTAAT
ATTGCAGCGG TTCGTAAAGC CATTGATTCT GTAAAGCATC CAGCGCTTTT GCTGGTGGAT
AGCGTGTCGG GCCTTGGTTC TGCGGACTAT GAGCATGATC AGTGGGGCGC AGATGTGACT
GTTTCAGGAT CGCAAAAAGG GTTGATGTTG CCTCCTGGCA TCGGGTTTAA TGCCCTATCA
CCGAAAGCAA TTGAAGCCAG CAAACACAGT ACGTTCCCAA AATCCTATTG GGCTTGGGAT
GAAATCCTGG AGTCGAATAA AACAGGCTAC TGGCCAACTA CTCCTAGCAC CAATCTCATG
TATGGATTGC ACGAAGCAAT AGACATGATG ATGGCCGAAG GCTTAGATAC TATTTTTGCG
CGTCATCAGC GTTTAGCGGC CGCATGTCGT GAAGCAGTTA ATGCATGGGG CCTAGAAATT
CAGTGTCAGG ACAAAGATTG CCATTCGCCT GTTCTCACTT GTATTGCTGT TCCCGAAGGA
ATGGATGCTG ACGTTTTACG CAAGCATGCG CTTGAGAAGT TCAACCTTTC ATTAGGTACT
GGCTTAGGCA AAATCAAAGG TAAAGCCTTC CGAATCGGCC ATTTGGGCGA CTGCAACGAA
CTTAGCTTAA TGGCTGCCTT AAGTGGCGTA GAGATGAGTT TGGGCTCTAT GGGCTACAAA
CCCAAGGCTA GCGGGGTGGT TGCAGCCCAA GAATTCCTTA AATAA
|
|---|
| Protein sequence | MLKLDNHASG RHFLHIPGPS PVPPRVLRAI SYQTIDHRGP EFGQFGLKVL DGIKKIFKTE
QPVIIYSASG TGSWEGALVN VLNPGDKVLF YETGQFANLW RALAKRLGLD VEVVGKAGQD
SWRWGVDASV IEERLRKDTQ HEIKAVCVVH NETSTGVTSN IAAVRKAIDS VKHPALLLVD
SVSGLGSADY EHDQWGADVT VSGSQKGLML PPGIGFNALS PKAIEASKHS TFPKSYWAWD
EILESNKTGY WPTTPSTNLM YGLHEAIDMM MAEGLDTIFA RHQRLAAACR EAVNAWGLEI
QCQDKDCHSP VLTCIAVPEG MDADVLRKHA LEKFNLSLGT GLGKIKGKAF RIGHLGDCNE
LSLMAALSGV EMSLGSMGYK PKASGVVAAQ EFLK
|
|---|
| |