Gene Pnuc_0468 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0468 
Symbol 
ID5053986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp459660 
End bp460610 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content44% 
IMG OID640470621 
ProductTRAP transporter solute receptor TAXI family protein 
Protein accessionYP_001155252 
Protein GI145588655 
COG category[R] General function prediction only 
COG ID[COG2358] TRAP-type uncharacterized transport system, periplasmic component 
TIGRFAM ID[TIGR02122] TRAP transporter solute receptor, TAXI family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACTAC TGAAGATCAT CGCACTGTCA TTAAGTCTCT TGTGGATTAG CGCTCATGCG 
CAAAATATTT CCATTGCCAC TGGTGGTACT GGCGGCGTCT ACTATCCAAT GGGCGGTGGA 
TTAGCTTCGG TTCTCTCAAG CAAAGTCCCT GGGATGTCCG CAACCGCAGA AGTAACAGGC 
GGTTCAGTAG ACAACCTCAA CTTGATTGGT ACCGGCAAAC CTTACGTAGG CTTTTCTATG 
GCAGATGCTG CCAAAGACGC CCAAATTGGT GAAGGCAAGT TTGTTAACAA AAAAGTGGAT 
CTCCGTACCC TGGTAGTTCT ATATCCAAAC TTGATGCATG TGGTGACTGT TGACTCTACC 
GGCATCAAAT CTATGAAAGA CCTTAAAGGC AAACGCGTGA GTACAGGCGC ACCTGGAAGT 
GCAACTGAAG TCATGGCCTT CCGCTTGTTA GAAGCTGCCG GCATGGATAA GGATAAAGAT 
GTGAAACGCG AGCGTCTCAG CGTAGCGGAA TCTGTAAATG CAATCAAAGA CCGCAAGATT 
GATGCATTTT TCTGGGTAGG CGGTCTACCA ACAGCCGCTG TGACTGATTT AGCAAACACG 
CCTGGTACCA AAATTGTGAT GATTGATACG AACGAAGAAG TGACTGCCAT GAATAAGAAG 
TATGGCAACC TCTACTTCAC CGCAAATATT CCTAAGGCAA CCTATAGTGG CATGGCCAAG 
GACAATAAAG TCGCTGCGGT TGCAAATATC TTAGTAGTTA ATGCCAATAT GCCAGATGAT 
CAAGCATACA AAATTGTGAA GGCAATTTTT GATAACAAAC TTGAGCTAGT TCGTACCCAT 
CAAGAATTTA TGAGTGTTAA TCTCGATAAT CAAAAACAAA AAGCCACCCC GATAGACTTT 
CATCCTGGTG CTTTAAAGTT CTTTAAAGAA AAGAATGCCA AAGTAAATTA A
 
Protein sequence
MKLLKIIALS LSLLWISAHA QNISIATGGT GGVYYPMGGG LASVLSSKVP GMSATAEVTG 
GSVDNLNLIG TGKPYVGFSM ADAAKDAQIG EGKFVNKKVD LRTLVVLYPN LMHVVTVDST 
GIKSMKDLKG KRVSTGAPGS ATEVMAFRLL EAAGMDKDKD VKRERLSVAE SVNAIKDRKI 
DAFFWVGGLP TAAVTDLANT PGTKIVMIDT NEEVTAMNKK YGNLYFTANI PKATYSGMAK 
DNKVAAVANI LVVNANMPDD QAYKIVKAIF DNKLELVRTH QEFMSVNLDN QKQKATPIDF 
HPGALKFFKE KNAKVN