| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0424 |
|---|
| Symbol | |
|---|
| ID | 5052706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 412229 |
|---|
| End bp | 414724 |
|---|
| Gene Length | 2496 bp |
|---|
| Protein Length | 831 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470577 |
|---|
| Product | DnaB domain-containing protein |
|---|
| Protein accession | YP_001155208 |
|---|
| Protein GI | 145588611 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0305] Replicative DNA helicase |
|---|
| TIGRFAM ID | [TIGR00665] replicative DNA helicase
[TIGR01443] intein C-terminal splicing region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000384079 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAT CCCGTTCACG TTCCGTTACG CTGAATCCCG GCATGATGGG TTCTGGGGAT
CCAGTCGTGC AGGCTTTAAA AGTTCCACCG CATTCTGTAG AAGCCGAGCA ATCTTTGCTC
GGCGGTCTGC TGATTGATAA CACTGCCTGG GATCGTCTAG GCGGCGTCTT ATCCGAAAAA
GATTTCTATC GTCCTGAACA TGCTTTGATC TATAAGGTCA TCGCACGTTT AGTGAGTGAC
AATCATCCCG CTGACGTCAT TACTGTTCAT GAGGCAGTTA AGTCAGAACA AGGCGGTGAT
TTAGTTGGTA TTGATTACCT CAACTCATTA GCGCAAAGCA CTCCTAGTGC CGCAAATATC
AAAGGCTATG CCGATATCGT GCGTGATCGC AGCATTCTGC GTCGCTTGAT TGAAGTTTCA
GACAATATTG TTAACTCTGC TTTTGTTCCA GAAGGCCGTT CCGTGAGAAC CCTTCTTGAT
GAAGCCGAGT CTCGTATTTT GCAAATTGGT GAAGAGGGCA GTCGTAAAGC CGACTACCTC
GAGATTGAGC CTCTTTTAAG AACCGTTGTA GCTCGCATCG ATGAGCTTTA TAACCGCCAG
GGTGGTAGCG ACATTACTGG TATTGCTACT GGCTTCATTG ATTTAGATAA ACAAACCAGC
GGCCTGCAAA AAGGTGACTT AGTTATCGTT GCCGGTCGAC CATCCATGGG CAAAGCGCAG
CCCTTGGATG CAAAAGTGAA AACAGTCGAC GGTTGGAAGT TAATGGGCGA CTTACGTTTT
GGTGACCGTC TTGCTTCGGT GGATGGTCAG CACTCTATGG TCACTGGCAT ATACCCGCAA
GGCATTAAGC AAATATATAA AGTCACTTTC TCTGATGGTC GTGAAGCCGA GTGCTGCGAT
GAGCATCTAT GGCGGGTCAT GTATCGAGAG TGGAATGAGC CTAGGGTAAT TAATACCGCT
CGCCTAATCG AAATGCTTTC CTGCTCTCGT TACAAGAGCC GTCTATGGTT TGATCCTGTT
TCAGGCGATT TTGGCCATTC CGAGGAGTTA CCAATTCATC CGTGGGTTTT AGGTGCATTA
TTAGGTGATG GAACCTTGGC CTTATCTCAT AGCTCGGTAA TGTTCTCAAC TAAATCGTCA
GAACTTATTG AGCGCATGAA TATGCTTGCG GGCTATGAGA TGGAGTTGGT TCATGCCAAT
GCATACGACT GGAGATTAGT CTCCAAGGAG AGAGTAGCAG TTAATGGCCA GCGCCAATCA
GTACCAACCA ATTATTTCAG ATCTGCACTA CAAGATTTAG GTGTACTAGG TTGCAGAAGT
TTTGATAAAT ACATTCCCGC TACTTATCTT GAGGCTAATA AGGCTTCTCG GCTTGCTTTA
TTCCAGGGCT TGATGGATAC CGATGGCTGG ATTGAGAAGT GGGGCTCTAT TCGTTTTTGC
ACAGCTAGCA AGCAATTATC TGAGGACGTT GCATCTTTAG CTAGATCATT GGGTGGTTTT
TGCTCAATTG CACGCAAGCA ATCGAGTTAT ACCTATAAGG GCGAGAAGAA GCAGGGTCGC
TTAGCTTATG TTTTGAATAT GAGTTTTGGA CCTAGCTTTC AAGCTTTTAC TTTGCCTGAA
AAGTGCGAAA GATTGAGATC ACAATGGGAT CGTCAGCGCA GAATTACCTT CAAGAGTATT
GAGCCAAACA GAACGGCCCA AGCCCAATGT GTTTCTGTTA GTCACCCTTC GCGAACTTAT
GTAACCAATG ACTATGTCGT TACTCACAAC ACTGCATTCG CTTTGAATAT TGCTGAGAAT
GTGGCATTAG CAGAAGGCTT GCCTGTTGTT GTCTTCTCCA TGGAGATGTC AGGCGAGCAA
TTGGCTGCCC GTTTATTGGG TTCAGTAGGG CGTGTTGATC AAGGTCGTAT GCGTACTGGA
AAATTGCAGG ATGACGAATG GCCGCGAGTG ACTGATGCTA TTGCGCGTTT AAGCAATACC
CAAATTTTGA TTGATGAAAC CGGAGCACTA TCTAGCTTAG AGTTACGTGC GCGTGCGCGT
CGTATTGCTA GAAACTTTGG TGGCACACTC GGCTTAGTGG TGATCGACTA CTTGCAGTTA
ATGAGCGGTT CTGGATCGGA AAACCGCGCA ACAGAGATTT CTGAAATCTC TCGCTCACTC
AAGTCTCTCG CAAAAGAATT ACAGTGCCCA GTGGTTGCGC TCTCCCAGTT AAATCGTGGT
CTTGAGCAGC GTCCCAACAA GCGTCCCATC ATGTCTGACC TACGAGAGTC AGGCGCGATC
GAACAAGATG CCGACTTAAT TATGTTCATA TACCGTGATG AGGTGTATCA CCCGGATACG
ACTACTGATA AAGGCATGGC TGAGATCATT ATCGGTAAGC AACGTAACGG GCCAATTGGT
ACTGTGCGTC TGAGCTGGCA AGGTCCTTAT ACCAAGTTCG ACAACTTGGC GATGGGATCA
ATTGGTTACT CCTCTGGTGG GTATGAACCA TTCTAA
|
|---|
| Protein sequence | MAESRSRSVT LNPGMMGSGD PVVQALKVPP HSVEAEQSLL GGLLIDNTAW DRLGGVLSEK
DFYRPEHALI YKVIARLVSD NHPADVITVH EAVKSEQGGD LVGIDYLNSL AQSTPSAANI
KGYADIVRDR SILRRLIEVS DNIVNSAFVP EGRSVRTLLD EAESRILQIG EEGSRKADYL
EIEPLLRTVV ARIDELYNRQ GGSDITGIAT GFIDLDKQTS GLQKGDLVIV AGRPSMGKAQ
PLDAKVKTVD GWKLMGDLRF GDRLASVDGQ HSMVTGIYPQ GIKQIYKVTF SDGREAECCD
EHLWRVMYRE WNEPRVINTA RLIEMLSCSR YKSRLWFDPV SGDFGHSEEL PIHPWVLGAL
LGDGTLALSH SSVMFSTKSS ELIERMNMLA GYEMELVHAN AYDWRLVSKE RVAVNGQRQS
VPTNYFRSAL QDLGVLGCRS FDKYIPATYL EANKASRLAL FQGLMDTDGW IEKWGSIRFC
TASKQLSEDV ASLARSLGGF CSIARKQSSY TYKGEKKQGR LAYVLNMSFG PSFQAFTLPE
KCERLRSQWD RQRRITFKSI EPNRTAQAQC VSVSHPSRTY VTNDYVVTHN TAFALNIAEN
VALAEGLPVV VFSMEMSGEQ LAARLLGSVG RVDQGRMRTG KLQDDEWPRV TDAIARLSNT
QILIDETGAL SSLELRARAR RIARNFGGTL GLVVIDYLQL MSGSGSENRA TEISEISRSL
KSLAKELQCP VVALSQLNRG LEQRPNKRPI MSDLRESGAI EQDADLIMFI YRDEVYHPDT
TTDKGMAEII IGKQRNGPIG TVRLSWQGPY TKFDNLAMGS IGYSSGGYEP F
|
|---|
| |