Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0406 |
Symbol | rnc |
ID | 5053042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 397982 |
End bp | 398773 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640470557 |
Product | ribonuclease III |
Protein accession | YP_001155190 |
Protein GI | 145588593 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.832098 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGCGC GCGCCGTCAT TGAAACCGCA ACGCTTCAAG AGCGCCTTGG CTACGTCTTT AAAAAGACTG AGCTTCTTAA TCAAGCCTTA ACGCATCGCA GCCACAGCAA GAAGAATAAC GAACGCCTGG AGTTTTTGGG CGATTCTATT TTGAACTGCG TGGTTGCAGA TCTCTTGTAT GAGCGCTACT CTGATTTAGA CGAGGGTGAC CTTTCTCGTG TCCGCGCTAA TTTGGTGAAG CAACAGGCTT TATATGAAAT AGCGCAGACA CTTTTATTGT CTGACCATCT TCGCCTTGGT GAAGGTGAGT TAAAAAGTGG GGGATTCCGT CGCCCATCGA TTCTGGCGGA TACTTTAGAG GCGGTAACGG GCGCAATCTT TTTGGATGGC GGTTTTGATG CTGCAAAAGA TTGCTTGCGT AAGCTGTACT CGGTGATTTT GGCTCAAGTT GATCCCAAGA CTTTAGGTAA AGATGACAAA ACACTTTTAC AAGAGTGTTT GCAGGGCTAC CAACTGCCTT TGCCAACTTA TAACGTCACA GGAACAACTG GTGCTGCACA TAATCAACAG TTTGAGGTTG AGTGCTTAAT TCCAAGTCTG AAGGTTTCTG TCAAAGGTGA TGGTGCATCA CGCCGCGCTG CCGAACAATC GGCCGCTAAG ATCGCTTTAG TTGCGGTGCT CAAGGCCCTG CCTCAAGAAT CTCGTAAACC CAAGAAAACT CGGTCGGCTA AGAAGAAGGC GGCCAAAAAA GAAGTGACCG AAGAGCAGTT AAATCTTAAG CTGAAGGGCT AA
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Protein sequence | MNARAVIETA TLQERLGYVF KKTELLNQAL THRSHSKKNN ERLEFLGDSI LNCVVADLLY ERYSDLDEGD LSRVRANLVK QQALYEIAQT LLLSDHLRLG EGELKSGGFR RPSILADTLE AVTGAIFLDG GFDAAKDCLR KLYSVILAQV DPKTLGKDDK TLLQECLQGY QLPLPTYNVT GTTGAAHNQQ FEVECLIPSL KVSVKGDGAS RRAAEQSAAK IALVAVLKAL PQESRKPKKT RSAKKKAAKK EVTEEQLNLK LKG
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