Gene Pnuc_0398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0398 
Symbol 
ID5053032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp389364 
End bp390350 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content47% 
IMG OID640470549 
Product3-oxoacyl-(acyl-carrier-protein) synthase III 
Protein accessionYP_001155182 
Protein GI145588585 
COG category[I] Lipid transport and metabolism 
COG ID[COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III 
TIGRFAM ID[TIGR00747] 3-oxoacyl-(acyl-carrier-protein) synthase III 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0191225 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTATTT TTTCAAGAAT CGCGGGTACC GGAAGCTATC TGCCTGAGTT GCGTCTAACC 
AATCAAGATT TGGTTGAGCG TTTAGCCAAA ACTGGCCTAG AAACCAGTGA TGAATGGATT 
GCCACTCGTA GTGGTATTTC TGCACGTCAC TTTGCTGCTG AAAATGAATT AACTAGCGAT 
TTAGCGCTCA AGGCAGCTCA AGCTGCATTA AGTAGTGCTG GTATTACTTC TTCAGATTTA 
GATCTCATCA TTTTGGCAAC CTCAACCCCT GATCATTTGG GTGGTTTTCC GAGTACCGCC 
TGTGTAGTGC AAGATAAGTT AGGTGCCCAT ACCGCCTGCG CTGCTTTTGA TGTGCAAGCA 
GTCTGCGCAG GATTTACTTA TGCCTTAGCC ACTGCGGATG CATTTATTCG AACAGGCTCT 
TACAAAAAAG TATTGGTAAT CGGCGCTGAA ACCTTTTCAC GCATTCTGGA TTTTCAAGAT 
CGCGGTACTT GCGTGTTGTT TGGCGATGGA GCTGGTGCCG TAGTGTTAGA AGCATCTTCC 
GAGCCAGGCA TCTTATCGAC AGCCTTGCAT GCTGATGGTA GTCAGCGAGA TATTTTGTGT 
GTCCCAGGCC GCTCAGGTAA TGGTGCGGTA CATGGTTCTC CATTCATGAC TATGGATGGT 
CAAGCGGTAT TTAAATTGGC TGTGAAAGTC TTAGAGCAAG TAGCGCATGA AGTGTTGGCT 
AAAGCGAATC TCAAGCCAGA ACAAATTGAT TGGTTGGTAC CTCATCAAGC TAACATTCGC 
ATCATGGAGG GAACTGCCAA GAAGATGGGC ATGTCGATGG ATAAAGTGAT TGTGACTGTG 
CATGAGCACG GCAATACTTC TGCTGCATCC ATTCCCTTGG CGCTTGACTG TGGCATTCGC 
TCTGGTCAAA TTCAGCGCGG TCAACACTTG CTGTTAGAGG GTGTAGGCGG TGGTTTTGCT 
TGGGGCGCAG TGGCACTCAA GTACTAA
 
Protein sequence
MSIFSRIAGT GSYLPELRLT NQDLVERLAK TGLETSDEWI ATRSGISARH FAAENELTSD 
LALKAAQAAL SSAGITSSDL DLIILATSTP DHLGGFPSTA CVVQDKLGAH TACAAFDVQA 
VCAGFTYALA TADAFIRTGS YKKVLVIGAE TFSRILDFQD RGTCVLFGDG AGAVVLEASS 
EPGILSTALH ADGSQRDILC VPGRSGNGAV HGSPFMTMDG QAVFKLAVKV LEQVAHEVLA 
KANLKPEQID WLVPHQANIR IMEGTAKKMG MSMDKVIVTV HEHGNTSAAS IPLALDCGIR 
SGQIQRGQHL LLEGVGGGFA WGAVALKY