Gene Pnuc_0274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0274 
Symbol 
ID5052395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp270121 
End bp270624 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content45% 
IMG OID640470426 
ProductOmpA/MotB domain-containing protein 
Protein accessionYP_001155059 
Protein GI145588462 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID[TIGR02802] peptidoglycan-associated lipoprotein 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00497769 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTGT CTATCGCACG CCGTGCCGCA ACATTCGCCC TGATTGGAGC TACCGCATTT 
TTAATGGCAG CCTGTTCAAG CGTGAAACTA GATGACGTTG ATGGAGCTAA CGGCAGTGGT 
GGCAGCGGGA GTTACGGCTC CCAGCCATGG AATGATCCTA AGAGCCCACT CTTTGAGAAG 
AGTGTCTACT TTGGCTTTGA TGAATACACC GTGCAGACTA AATATCAAAA GATGTTATCT 
GCACATGCTA GCTACTTAAA GGCTAATCCA AAACAAAAAA TCATTATTCA AGGTAATACT 
GATGAACGCG GTACAGCTGA ATACAACTTG GCACTTGGCC AACGACGTTC AGACGCTGTT 
CGCAAATCAT TGAACTTGAT GGGTGTTTCT GACGATCAAA TGGAAGCGGT CAGCTTTGGT 
AAAGAGAAAC CAAAAGCTGA AGGTGATAGT GAAGCCGCTT TTGCAGAAAA CCGCCGCGCT 
GACATTGTTT ATATTACGAA CTAA
 
Protein sequence
MKVSIARRAA TFALIGATAF LMAACSSVKL DDVDGANGSG GSGSYGSQPW NDPKSPLFEK 
SVYFGFDEYT VQTKYQKMLS AHASYLKANP KQKIIIQGNT DERGTAEYNL ALGQRRSDAV 
RKSLNLMGVS DDQMEAVSFG KEKPKAEGDS EAAFAENRRA DIVYITN