Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0258 |
Symbol | |
ID | 5052369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 256267 |
End bp | 257886 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640470410 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_001155043 |
Protein GI | 145588446 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.17913 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCCAG CCCGTTTTCG CCACTCCAGA CTAACCATCT TTGGTTTGCT CCTGAGTCAG GCGCTCGGCC TCAATTCTTG GTATTCGAAT GCTTTGGCCC AGACCCCTAC TGGAGCAGCT AGATCAGCCT TGCCCAGCCT GGTTAGCCCA TCTTCATTAA CCGGTCTAGA TCAGCCCCCG CAGATTGCAC CCTTACCCAA GCAAGCGCTT CCGAGCCAAG ATGCGCCTTC TTACCTGGGT AATGGCAAAC AAAACAGCCA AGGGCAGTTA ACCGATTTAA TTGCCTTGTA TCAAGATGCT GCCTTTAGTG ATCCAGTTCT CACTGCGGCT CGCTTTAATT ATCAAGCTAG TAAAGAGTTG TATTGGCAAG GTCTGTCTCT TTTACTTCCT CAGGCTATAG CTACGCCAGG AGCCACGCGC TACTACCAAC ATGGCGCAGG TACTACTGTT GTCTCGACTG GGCCAGGTAA CTCCCGAGTA TTTGACCAAA AGAGTTACAC CGTCACACTT ACTCAACCCG TGTTCAATGT AGGTGCATTA GAAGCTTTCA AACAAGGTGA TCTGAATACC AAGATTGCTG ATATGAATTT CTTTCAAGCT CAGCAAGATC TGATCTTAAG AGTGTCACAA GCGTATTTTG ATGCTTTGAC GAGCCAAGAC AATGTGACTT TATATCGCAA CAAGAAAGAC CTGATTAAGC AGCAATTAGA TGTGGCTCAA GCAAAATTCG ATGCCGGCCT CGCAACGATT GTGGATGTGA ATACCGCTCA AGCCAGCTAT GACCTTACTG TGTCGCAAGA GATTGCAGCA CAAGCTGATT TGGTTGTGAA GAAAGGGATT TTGGAGCAGC TGGTTGGACA TCCAGTTGGG CCGCTAAAGC CATTGGTTAA GCAAGCAAAG ATTGATGGTG TTCTCAAGGA TCCACGCAGC AAAAGCAAAG ACAACAAGAC TACTCCTTTG GTAGAAAGCG TTAATCCACA GCTACCTCCA GGGCAAACAT TGGAAGACTG GATTAACCAA ACTGAAGCGG CTAATTTCAA GGTATTGGCG AGCCAACTAT CGGTGAGTCT TGCCGAAAGT ACTTATCGCG CCTCTATGGC TCTCAACTAC CCCTCGTTAA ACTTAGTAGG TACTTCGGGC TATAACACCT CTAATGGCAC GCCAAATAGC TACACCCCTT CCCAAACCAA TGTGTACAAC AATACCTTGG GTTTACAACT GAGCATCCCA TTGGTTTCTG GTGGCTACAA CACCTCAGTT ATCCGTCAAA ACTCTGCATT AGTCGATAGC GCTAAAGCAA ACTATGACAA TGCAAGACGC ACGGCAGCAC AAAATACCAG GGCGGCATTT ACTGGATTTT ATGGTGGCCT AGCGAGCGTT AAAGCATTTG AGGCGGCTGA GAGATCATCT GAATCTGCTG TTGAATCTAG TAGACTAGGA TTTCAGGTGG GGACCTTGAT TAATATTGAT GTATTAATTG CAGTAGATAC TTTGTTCACT ACCCGCTCTC AGCTTCAGCA AGCCCGTTAC AACACCATTC TCAATGCGCT GCGCCTCAAA GCAAGTGCCT CTACTTTGAC CGATGAGGAT TTGCTAGCCA TCAACTCTTT GATGCGCTAA
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Protein sequence | MTPARFRHSR LTIFGLLLSQ ALGLNSWYSN ALAQTPTGAA RSALPSLVSP SSLTGLDQPP QIAPLPKQAL PSQDAPSYLG NGKQNSQGQL TDLIALYQDA AFSDPVLTAA RFNYQASKEL YWQGLSLLLP QAIATPGATR YYQHGAGTTV VSTGPGNSRV FDQKSYTVTL TQPVFNVGAL EAFKQGDLNT KIADMNFFQA QQDLILRVSQ AYFDALTSQD NVTLYRNKKD LIKQQLDVAQ AKFDAGLATI VDVNTAQASY DLTVSQEIAA QADLVVKKGI LEQLVGHPVG PLKPLVKQAK IDGVLKDPRS KSKDNKTTPL VESVNPQLPP GQTLEDWINQ TEAANFKVLA SQLSVSLAES TYRASMALNY PSLNLVGTSG YNTSNGTPNS YTPSQTNVYN NTLGLQLSIP LVSGGYNTSV IRQNSALVDS AKANYDNARR TAAQNTRAAF TGFYGGLASV KAFEAAERSS ESAVESSRLG FQVGTLINID VLIAVDTLFT TRSQLQQARY NTILNALRLK ASASTLTDED LLAINSLMR
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