| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0258 |
|---|
| Symbol | |
|---|
| ID | 5052369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 256267 |
|---|
| End bp | 257886 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470410 |
|---|
| Product | TolC family type I secretion outer membrane protein |
|---|
| Protein accession | YP_001155043 |
|---|
| Protein GI | 145588446 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.17913 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCAG CCCGTTTTCG CCACTCCAGA CTAACCATCT TTGGTTTGCT CCTGAGTCAG
GCGCTCGGCC TCAATTCTTG GTATTCGAAT GCTTTGGCCC AGACCCCTAC TGGAGCAGCT
AGATCAGCCT TGCCCAGCCT GGTTAGCCCA TCTTCATTAA CCGGTCTAGA TCAGCCCCCG
CAGATTGCAC CCTTACCCAA GCAAGCGCTT CCGAGCCAAG ATGCGCCTTC TTACCTGGGT
AATGGCAAAC AAAACAGCCA AGGGCAGTTA ACCGATTTAA TTGCCTTGTA TCAAGATGCT
GCCTTTAGTG ATCCAGTTCT CACTGCGGCT CGCTTTAATT ATCAAGCTAG TAAAGAGTTG
TATTGGCAAG GTCTGTCTCT TTTACTTCCT CAGGCTATAG CTACGCCAGG AGCCACGCGC
TACTACCAAC ATGGCGCAGG TACTACTGTT GTCTCGACTG GGCCAGGTAA CTCCCGAGTA
TTTGACCAAA AGAGTTACAC CGTCACACTT ACTCAACCCG TGTTCAATGT AGGTGCATTA
GAAGCTTTCA AACAAGGTGA TCTGAATACC AAGATTGCTG ATATGAATTT CTTTCAAGCT
CAGCAAGATC TGATCTTAAG AGTGTCACAA GCGTATTTTG ATGCTTTGAC GAGCCAAGAC
AATGTGACTT TATATCGCAA CAAGAAAGAC CTGATTAAGC AGCAATTAGA TGTGGCTCAA
GCAAAATTCG ATGCCGGCCT CGCAACGATT GTGGATGTGA ATACCGCTCA AGCCAGCTAT
GACCTTACTG TGTCGCAAGA GATTGCAGCA CAAGCTGATT TGGTTGTGAA GAAAGGGATT
TTGGAGCAGC TGGTTGGACA TCCAGTTGGG CCGCTAAAGC CATTGGTTAA GCAAGCAAAG
ATTGATGGTG TTCTCAAGGA TCCACGCAGC AAAAGCAAAG ACAACAAGAC TACTCCTTTG
GTAGAAAGCG TTAATCCACA GCTACCTCCA GGGCAAACAT TGGAAGACTG GATTAACCAA
ACTGAAGCGG CTAATTTCAA GGTATTGGCG AGCCAACTAT CGGTGAGTCT TGCCGAAAGT
ACTTATCGCG CCTCTATGGC TCTCAACTAC CCCTCGTTAA ACTTAGTAGG TACTTCGGGC
TATAACACCT CTAATGGCAC GCCAAATAGC TACACCCCTT CCCAAACCAA TGTGTACAAC
AATACCTTGG GTTTACAACT GAGCATCCCA TTGGTTTCTG GTGGCTACAA CACCTCAGTT
ATCCGTCAAA ACTCTGCATT AGTCGATAGC GCTAAAGCAA ACTATGACAA TGCAAGACGC
ACGGCAGCAC AAAATACCAG GGCGGCATTT ACTGGATTTT ATGGTGGCCT AGCGAGCGTT
AAAGCATTTG AGGCGGCTGA GAGATCATCT GAATCTGCTG TTGAATCTAG TAGACTAGGA
TTTCAGGTGG GGACCTTGAT TAATATTGAT GTATTAATTG CAGTAGATAC TTTGTTCACT
ACCCGCTCTC AGCTTCAGCA AGCCCGTTAC AACACCATTC TCAATGCGCT GCGCCTCAAA
GCAAGTGCCT CTACTTTGAC CGATGAGGAT TTGCTAGCCA TCAACTCTTT GATGCGCTAA
|
|---|
| Protein sequence | MTPARFRHSR LTIFGLLLSQ ALGLNSWYSN ALAQTPTGAA RSALPSLVSP SSLTGLDQPP
QIAPLPKQAL PSQDAPSYLG NGKQNSQGQL TDLIALYQDA AFSDPVLTAA RFNYQASKEL
YWQGLSLLLP QAIATPGATR YYQHGAGTTV VSTGPGNSRV FDQKSYTVTL TQPVFNVGAL
EAFKQGDLNT KIADMNFFQA QQDLILRVSQ AYFDALTSQD NVTLYRNKKD LIKQQLDVAQ
AKFDAGLATI VDVNTAQASY DLTVSQEIAA QADLVVKKGI LEQLVGHPVG PLKPLVKQAK
IDGVLKDPRS KSKDNKTTPL VESVNPQLPP GQTLEDWINQ TEAANFKVLA SQLSVSLAES
TYRASMALNY PSLNLVGTSG YNTSNGTPNS YTPSQTNVYN NTLGLQLSIP LVSGGYNTSV
IRQNSALVDS AKANYDNARR TAAQNTRAAF TGFYGGLASV KAFEAAERSS ESAVESSRLG
FQVGTLINID VLIAVDTLFT TRSQLQQARY NTILNALRLK ASASTLTDED LLAINSLMR
|
|---|
| |