| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0219 |
|---|
| Symbol | pyrF |
|---|
| ID | 5053519 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 217598 |
|---|
| End bp | 218443 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640470371 |
|---|
| Product | orotidine 5'-phosphate decarboxylase |
|---|
| Protein accession | YP_001155004 |
|---|
| Protein GI | 145588407 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
|---|
| TIGRFAM ID | [TIGR02127] orotidine 5'-phosphate decarboxylase, subfamily 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCTC GCTCAAACAC CTTTCACCAG CAACTCCAGT CCGCATGGGC TTCGCAAGGC
AGCATGCTGT GTGTGGGTTT TGACCCGGAT CCTAAGCGTC TACCTCTGCC CCTCCAAGGA
AAGTCTGAGG GGATCTTTGA GTTTTGCCGT GATATTGCTG ATGCGACTGC GGATCTGGTC
TGCGCATTCA AGCCCCAATT TGCTTACTTT GCCTCTCAAA GAGCTGAGGC CCAACTAGAA
AAGCTCATCA AGCACCTCAA AGATAAATAT CCTCATATTC CTGTCATCCT AGACTCAAAG
CGCGGAGATA TCGGGACTAC TGCTGACCAT TACGCTTTAG AAGCATTTGA TCGCTATGGC
GCTGATGCCG TCACAGTCAA TCCCTATATG GGATTTGACA CAATCGAGCC CTATCTACGA
CATGCTGGCA AAGGTGTAAT CGTCCTCTGT CGTACCTCTA ACCCTGGCGG CTCTGACCTG
CAATTTCTCA ATACGGCGCC AAGCGGTGAA CCGCTCTACC TCCATGTTGC CAAACTCGCA
GCGCAAGAGT GGAACAGCTC AGGGCAAATT GGCCTCGTGG TGGGCGCTAC CTTTCCAGAT
GAAATCGCTA AGGTAAGAGC GATTGTTGGT GAGATGCCTT TATTAATTCC AGGTATTGGT
GCTCAAGGTG GAGATATTGA CGCCACCGTT AAAGCGGGTG CAATTCCAGG AAAACCAGGT
ATTGGAATGA TCATCAACTC CTCTAGAGCC ATTTTGTATG CCAGTTCAGG CGCTGATTTT
GCTCAAGCAG CTAGAAATGT TGCCTTAAGT ACTCGGGAGG ACCTCAGGAC TGCGACAGCA
AAATAG
|
|---|
| Protein sequence | MNSRSNTFHQ QLQSAWASQG SMLCVGFDPD PKRLPLPLQG KSEGIFEFCR DIADATADLV
CAFKPQFAYF ASQRAEAQLE KLIKHLKDKY PHIPVILDSK RGDIGTTADH YALEAFDRYG
ADAVTVNPYM GFDTIEPYLR HAGKGVIVLC RTSNPGGSDL QFLNTAPSGE PLYLHVAKLA
AQEWNSSGQI GLVVGATFPD EIAKVRAIVG EMPLLIPGIG AQGGDIDATV KAGAIPGKPG
IGMIINSSRA ILYASSGADF AQAARNVALS TREDLRTATA K
|
|---|
| |