Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0204 |
Symbol | |
ID | 5052703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 200089 |
End bp | 203070 |
Gene Length | 2982 bp |
Protein Length | 993 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640470356 |
Product | ribonucleotide-diphosphate reductase subunit alpha |
Protein accession | YP_001154989 |
Protein GI | 145588392 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000988288 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATACG CAAATCCCCA GACAGCAGGC CAGCCAAGTG GAGCCAATAA TCCAGGAATG GGTGGCGCAG GGGCAATGAA TCAGACGCCA TCTGCCGGTT TTGTCGCTGG TGGTGTTGGG GGTAATCAAG CTACTCAATT GTCAGATTAC AAGATCATTC GTCGCAACGG TTCAGTCGTG GCTTTTGAGC CATCCAAGAT TGCCATTGCG GTAACTAAAG CATTTTTAGC GGTTAACGGT GGCCAAGGTG CTGCTTCTGC GCGCGTACGC GAGCAAGTGG AGCAACTGAC TCATTCAGTG GTGCGCGCTT TATTACGCAG TCGTCCAAAT GGCGGCACTT TCCACATTGA AGATATTCAA GACCAAGTTG AATTAGCATT AATGCGTAGT GGTGAGCACA ACGTTGCTCG CGCATATGTT CTTTATCGCG AAAAGCGCAA TCAAGAGCGT GCGGCTCAAC AAGAAGTGGC TCAAGAATCA CAATCAGCCG GTCAAGCTAC TGAATCCGGT ATCAAGGTTA CTGACAATGG CGTTGAAAAG TGGCTTGATA TGGCGGCACT CCGCACTGTG ATCGAAGCAG CTTGCGAAGG CTTGGGCAAT CATATTGATG CCACCCCGAT CATTACTGAA ACCATCAAGA ATTTGTACGA TGGTGTACCG ATGGCTCAAG TCTATGACTC AGCTATCTTG GCTTCACGTA CTTTGATTGA GAAAGATCCT GCATTCAGCC AGGTAACAGC TCGTATCTTG ATGCATGTGA TTCGTAAAGA AATCCTAGGC AAGGAAGTAT TGCAAGGCGA TATGCAGTCT GAGTACGGCA CTTACTTTGC CAAGTACATT AACGAAGGTA TCTCTGCTGA ATTGTTAGAT CCACGTATGC GTGAGTTTGA CTTGCCACGT TTGGCTGCTG CTTTGAATGC CAGCCGCGAC TTGCAGTTCA ATTACCTTGG CTTGCAGACT TTGTATGACC GCTATTTCTT GCATATTGAA GACCGTCGTA TCGAAATGCC ACAGGCTTTC TTTATGCGCG TGGCAATGGG CTTGTCCTTA AATGAATTGG ACCGTGAGCG TCGTGCAATC GAGTTCTATG AAATCCTCTC CACATTTGAT TTCATGTCCA GCACACCAAC CTTGTTCAAT TCAGCAACTA CTCGTCCACA ACTCTCTAGC TGCTATTTGA CGACTGTAGA AGATGACCTC GATGGAATTT ATGAGGCATT GAAAGAGAAT GCTTTGCTAT CCAAGTTTGC AGGCGGCTTG GGCAATGACT GGACTAACGT ACGTGCCTTG GGCAGCCATA TTAAGGGCAC CAACGGTAAG TCACAAGGCG TAGTGCCATT CCTCAAAGTA GTAAATGACA CTGCTGTTGC TGTAAACCAA GGCGGTAAAC GTAAAGGTGC TGTTTGCGCC TACTTGGAAA CATGGCACTT AGATATTGAA GAATTCTTGG AATTGCGTAA AAACACCGGT GATGATCGTC GTCGTACGCA TGACATGAAT ACTTCTAACT GGATTCCTGA CTTGTTTATG AAGCGCGTCA TGGAAAACGG TGACTGGACA TTGTTCTCTC CATCTAATAC CCCTGATTTG CATGACAAGT ACGGTAAAGC GTTCGAAGAG GCTTATGTTG CTTATGAGCA AAAGGCGGAT CGTGGTGAAT TGAAGCCCTT CCGCAGAATT CCTGCGCAGC AGTTATGGCG CAAGATGTTG GGCATGTTGT TTGAAACTGG CCACCCATGG ATCACTTTCA AAGACCCTTG CAATATTCGC AGCCCACAGC AGCATATTGG CGTAGTGCAC TCATCTAATT TGTGTACTGA GATTACTTTG AACACCAATG AGACTGAAAT CGCGGTTTGC AACCTGGGTT CTGTGAATTT GACTGCCCAC ATGACGACTG ATGCCAACGG TAAATTGGTG TTGGATCATG AGAAGCTCCA AAGAACTGTG CGTACAGCAA TGCGTATGTT GGATAACGTA ATTGATATCA ATTACTACGC GGTTGCCAAG GCTCGCAATT CGAACTTGAA GCATCGTCCA GTCGGCATGG GCATCATGGG CTTCCAGGAC TGCTTGCACA TGCAGCGTAT TCCTTATGCT AGCGAAGAGG CAGTGAAATT TGCCGACTCT TCTATGGAAG CGGTTTGCTA CTACGCTTAT CAAGCGTCTA ATGAATTAGC TGAAGAGCGC GGCGTTTACA GTACATACAC AGGCTCCCTA TGGGATCGCG GCATCCTGCC ACAAGACTCT GTAGCATTGT TAGCGCAAGA GCGTGGCGGA TATCTGGAAG TAGATAACTC CTCCACTATG GATTGGAGTG GTTTGCGCGC GCGTATCAAG CAATACGGTA TGCGTAACTC CAATTGCGTA GCAATTGCAC CAACAGCAAC GATTTCTAAC ATTATTGGCG TATCTGCTTG TATCGAACCA ACCTTCCAAA ACTTGTTTGT GAAGTCCAAT CTTTCTGGTG AGTTCACAGT GGTAAACGAG TATTTGGTAC GTGATTTGAA AGATCGCGGC CTTTGGGATG AAGTGATGAT TGCTGACTTA AAGTACTTTG ACGGTACTTT GTCTAAAATT GATCGTATTC CACAAGATTT GCGTGATTTG TATGCGACTG CCTTCGAGGT TGAGCCAAGC TGGTTGGTTG AGGCAGCTTC CCGCCGTCAA AAGTGGATTG ACCAAGCGCA GTCACTCAAT ATCTACATGG GTGGTGCTTC TGGTAAGAAA TTGGATGACA CCTATAAATT GGCGTGGTTG CGCGGCTTGA AGACTACTTA CTACCTCCGC ACGATGGCAG CGACTCACGT TGAGAAATCG ACTGTTGCTA GCGGCCAGTT GAACTCGGTT TCGAGTGGTG GCGGTGTAAA TGGTACTGAT GCAACTGCCG CAAGTGCTGC GGGTGGAGTT GAGGCTGATG GCCCGGTTTG CACAATGCGT CCAGGTGATG CTGGATTTGA AGAATGTGAA GCATGCCAAT AA
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Protein sequence | MTYANPQTAG QPSGANNPGM GGAGAMNQTP SAGFVAGGVG GNQATQLSDY KIIRRNGSVV AFEPSKIAIA VTKAFLAVNG GQGAASARVR EQVEQLTHSV VRALLRSRPN GGTFHIEDIQ DQVELALMRS GEHNVARAYV LYREKRNQER AAQQEVAQES QSAGQATESG IKVTDNGVEK WLDMAALRTV IEAACEGLGN HIDATPIITE TIKNLYDGVP MAQVYDSAIL ASRTLIEKDP AFSQVTARIL MHVIRKEILG KEVLQGDMQS EYGTYFAKYI NEGISAELLD PRMREFDLPR LAAALNASRD LQFNYLGLQT LYDRYFLHIE DRRIEMPQAF FMRVAMGLSL NELDRERRAI EFYEILSTFD FMSSTPTLFN SATTRPQLSS CYLTTVEDDL DGIYEALKEN ALLSKFAGGL GNDWTNVRAL GSHIKGTNGK SQGVVPFLKV VNDTAVAVNQ GGKRKGAVCA YLETWHLDIE EFLELRKNTG DDRRRTHDMN TSNWIPDLFM KRVMENGDWT LFSPSNTPDL HDKYGKAFEE AYVAYEQKAD RGELKPFRRI PAQQLWRKML GMLFETGHPW ITFKDPCNIR SPQQHIGVVH SSNLCTEITL NTNETEIAVC NLGSVNLTAH MTTDANGKLV LDHEKLQRTV RTAMRMLDNV IDINYYAVAK ARNSNLKHRP VGMGIMGFQD CLHMQRIPYA SEEAVKFADS SMEAVCYYAY QASNELAEER GVYSTYTGSL WDRGILPQDS VALLAQERGG YLEVDNSSTM DWSGLRARIK QYGMRNSNCV AIAPTATISN IIGVSACIEP TFQNLFVKSN LSGEFTVVNE YLVRDLKDRG LWDEVMIADL KYFDGTLSKI DRIPQDLRDL YATAFEVEPS WLVEAASRRQ KWIDQAQSLN IYMGGASGKK LDDTYKLAWL RGLKTTYYLR TMAATHVEKS TVASGQLNSV SSGGGVNGTD ATAASAAGGV EADGPVCTMR PGDAGFEECE ACQ
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