| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0189 |
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| Symbol | |
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| ID | 5052006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 185581 |
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| End bp | 186570 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640470341 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_001154974 |
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| Protein GI | 145588377 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.433494 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAGATCC CAAGAAAAAC CTCCATCGGA AGCTCAGAGA GCGATCTAAG CTACCAAAAA
GCCATTTTGG GTTCGGTCTC ACGTACCTTC GCGCTTACCA TTCCCCTATT GCCTCCAGAT
ATTGAAATAG TGGTGGGCAA TACCTATTTG CTATGTCGCA TTGTTGACAC CATTGAAGAT
GCAGCCGACT TAAGCCCCCA AATAAAACAA GATTTATCTA AACTATTTCT GGATGCAGTT
CTAGAAAAAT CCCCTGTCGA GACTTTTGTT GAACCTTGCC TTACTCACTT GCGTCATTAC
GGCAATTCTG ATGAATTGGA TTTGATTGCA AATACGCCAA CGGTTTTACG GATATTGCAT
ACCTGCTCCG CCAACGATCA AGCTGCTGTC AGTCGCTGTG TTTCCATCAT GTCCGAAGGA
ATGTCTCGCT TCCATGGAAA ACAAAATGAG GCTGGACTTA AAAATCTGAC TGAGTTTGAA
GAATATTGTT ATGTCGTTGC GGGTGTAGTT GGGGAACTTT TAACCACCAT CTTCAGCAAC
CATTCCCAAG CCTTTACTAA AAACATCGTA GGTCATGAGG AGCTTGCTAT TGCTTTTGGT
CAAGCATTGC AAATGACTAA TATCCTTAAG GACTCACCAG AAGATAAAGC ACGGGGCGTC
TCATGGAAGC CAGCTAATAT GAGCCAAACA ACCTTATTGG CGATTGCTTA TGACAAGCTA
AAGGACTCTC TGAACTACAT CCTACTCATC CCTAAGACGG ATTTGGGGAT GCGCCGCTTT
TGCTTTCTTG CCTTTGGCCT AGCGGTAATG ACACTCTCGA AAATCGCCAA ACGTGACAAA
TTTAATTGCA AAGATGAGGT GAAGTTATCT CGAAAATCGG TGATGGCTTT TTATGCCTTT
ACTAAGGTCG CAGTTAATAG CAATCTTCTG ATGAAAGTAT TTTTTCAGGT TTATGCAAAA
CCTCTTAGGA CGGCAGTTTC AAAAAGCTAA
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| Protein sequence | MQIPRKTSIG SSESDLSYQK AILGSVSRTF ALTIPLLPPD IEIVVGNTYL LCRIVDTIED
AADLSPQIKQ DLSKLFLDAV LEKSPVETFV EPCLTHLRHY GNSDELDLIA NTPTVLRILH
TCSANDQAAV SRCVSIMSEG MSRFHGKQNE AGLKNLTEFE EYCYVVAGVV GELLTTIFSN
HSQAFTKNIV GHEELAIAFG QALQMTNILK DSPEDKARGV SWKPANMSQT TLLAIAYDKL
KDSLNYILLI PKTDLGMRRF CFLAFGLAVM TLSKIAKRDK FNCKDEVKLS RKSVMAFYAF
TKVAVNSNLL MKVFFQVYAK PLRTAVSKS
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