| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0169 |
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| Symbol | ddl |
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| ID | 5053110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 164880 |
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| End bp | 165893 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640470321 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001154954 |
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| Protein GI | 145588357 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0022958 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTAAGC AAGAGGAACT GTTAATTCAG TGGGGCGATC GTGTAAAGGC GTGCCTGGCG
AATCTGGATA TAAAGTCTTT AGGCCGCGTA GGAGTATTGC TTGGCGGCCG TTCTGGTGAG
CGAGAGATTT CCCTGATGTC AGGCAATGGT GTTTTACAAG CCCTCCTCTC AAAAGGAGTG
GATGCCCATG GCTTTGATCC TGGATTGCGT AACCCAACTG AATTAGCTAC AGAAAAATTT
GATCGTATTT TCATTTCTCT TCATGGTCGT TTTGGAGAGG ATGGAACTAT TCAAGGTTTA
TTGGAATTAT TAGAGCTTCC CTATACCGGA AGTGGTGTCT TAGCTTCTGC CCTGGCAATC
GACAAGATTG CAACTAAGCA GATCTGGATC AGTAATGGGT TATCAACCCC AGAATATGAA
GAGCTGACTG CGAAGAGTGA CTGGAATGCG GTAGTTAAGC ATCTAGGTTT GCCGTTAATT
GTGAAGCCGG CTCATGAAGG TTCTTCTTTG GGCTTAACAA AAGTGAAGTC AGTGGAAGAG
CTGCCAGCTG CTTATCAGCT TGCAGCCGGT CTTGATAAAA AAGTAATCGC TGAAACCTGC
ATTGTTGGCG ATGAGTTGAC CTGTCCATTG GTAGGTCAAG GCAATAGTGC TGAGGCATTA
CCGGTGATTA AAATTATTCC ACCTCAAGCC AATTATGATT TCCACAACAA GTATTTCTCT
GATGAGACAC AGTATCTCTG CCCGACCGGC TTAACGGCTG AGATAAATGC TGCCGTTCAG
GATCTCGCTT TAGCTGCCTA TCAGACTCTT GGTTGTCGTA CATGGGGTCG CGCCGATGTC
ATGCTTGATA AAAAAACTGG CAAACCATAC TTGTTGGAAA TGAATACTTC GCCAGGAATG
ACATCTCATT CCTTGGTGCC GATGGCTGCG AAGGCTGCTG GTGTTGAGTA TGCAGATTTA
GTGCTTTGGT TATTGAGTCA AACCTTGCTG CAAAAAGAGG GCGCTCGTAC ATGA
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| Protein sequence | MSKQEELLIQ WGDRVKACLA NLDIKSLGRV GVLLGGRSGE REISLMSGNG VLQALLSKGV
DAHGFDPGLR NPTELATEKF DRIFISLHGR FGEDGTIQGL LELLELPYTG SGVLASALAI
DKIATKQIWI SNGLSTPEYE ELTAKSDWNA VVKHLGLPLI VKPAHEGSSL GLTKVKSVEE
LPAAYQLAAG LDKKVIAETC IVGDELTCPL VGQGNSAEAL PVIKIIPPQA NYDFHNKYFS
DETQYLCPTG LTAEINAAVQ DLALAAYQTL GCRTWGRADV MLDKKTGKPY LLEMNTSPGM
TSHSLVPMAA KAAGVEYADL VLWLLSQTLL QKEGART
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