Gene Pnuc_0088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0088 
Symbol 
ID5053557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp81968 
End bp83053 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content47% 
IMG OID640470240 
Product3-dehydroquinate synthase 
Protein accessionYP_001154874 
Protein GI145588277 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.627876 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAAA CACTTGAAGT TGATCTTGGT AATCGTAGCT ATCCGATTTA TATCGGCACA 
GATTTAATCG ATCAACCTGA GCTGTTTAAT GCCTGTGAAA AAGCGACTTC GATCTACATA 
GTCACTAATA CTACAGTCGC ACCCCTTTAC TCAGAGAGAC TTACTAAAAC ATTAGAAAAG 
TTTGGCAAGC CCGTCAGAAT CATTGCGCTA CCTGATGGGG AGTCATATAA GGATTGGAAA 
AATCTGCAGC TCATTTTTGA TGATCTATTG AAATTCGGCG CAGATCGTCA AACCATGCTG 
GTTGCCCTAG GCGGAGGCGT TATTGGGGAT ATGACCGGTT TTGCAGCAGC CAGCTTTATG 
CGCGGCATTC GCTTTATTCA GGTGCCGACC ACGCTACTAG CTCAGGTAGA TTCTTCTGTC 
GGCGGTAAAA CAGGCATTAA CCACCCCCTT GGGAAAAATA TGATTGGCGC CTTTCATCAG 
CCCGTGGCTG TGATTGCCGA TCTCAACACC CTGAAGACCT TACCACCACG TGAACTTTCA 
GCCGGCCTTG CAGAGGTTGT AAAGCATGGG GCTATCGCTG ATGCCCAATT CCTAGATTGG 
ATCGAAGCCA ATGCAAAGGC GCTACTTGCT TGTGACACTG ACGCAATGGG GCATGCAGTA 
TTGCGTTCAT GCGAAATTAA ATCAGCCGTT GTCTCTGCAG ATGAGAGAGA GGGTGGTATT 
CGCGCTACTC TGAACTTTGG CCATACCTTT GGTCACGCGA TTGAAGCTGG CATGGGTTAC 
GGCGAGTGGC TACATGGTGA AGCAGTTGGT TGCGGCATGG TGCTCGGTGC AGACTTATCG 
TGCCGCCTTA AACGCATTAG CAAAGCTGAT GTTGAACGCC TAACAAAGAT TATTCACTCC 
ATGAACCTGC CTATTGTTCC CCCAAAGTTT GGTGTGAAAC GTTACATGGA ACTCATGCAA 
GTGGATAAAA AAACTGAGGG CGGCCAAATT CGCTATGTGA TTCTTGAAAA AATAGGAAAA 
GCCCAAATTG AAAGTGCTCC AGACGCACTT GTCAAAGAAA CGCTGAGCGC TACTGGTGCA 
GCTTAA
 
Protein sequence
MMKTLEVDLG NRSYPIYIGT DLIDQPELFN ACEKATSIYI VTNTTVAPLY SERLTKTLEK 
FGKPVRIIAL PDGESYKDWK NLQLIFDDLL KFGADRQTML VALGGGVIGD MTGFAAASFM 
RGIRFIQVPT TLLAQVDSSV GGKTGINHPL GKNMIGAFHQ PVAVIADLNT LKTLPPRELS 
AGLAEVVKHG AIADAQFLDW IEANAKALLA CDTDAMGHAV LRSCEIKSAV VSADEREGGI 
RATLNFGHTF GHAIEAGMGY GEWLHGEAVG CGMVLGADLS CRLKRISKAD VERLTKIIHS 
MNLPIVPPKF GVKRYMELMQ VDKKTEGGQI RYVILEKIGK AQIESAPDAL VKETLSATGA 
A