Gene Pnuc_0078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0078 
Symbol 
ID5053419 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp73445 
End bp74425 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content45% 
IMG OID640470230 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_001154864 
Protein GI145588267 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAACAA ATTTGCTCAA GCCAAAGATT ATTTCTGTTG AAGCGCTTAC CGCCAACCAA 
GCTAAGGTTG TTATGGAGCC GTTCGAGCGT GGCTATGGCC ACACACTCGG AAATGCATTA 
CGTCGCGTAC TCTTGTCCTC AATGGTTGGT TATGCGCCAA CTGAAGTTGC TATTGCTGGA 
GTTGTTCATG AGTACTCCAC TTTGGACGGC GTTCAAGAGG ACGTAGTTAA CCTCTTATTG 
AACCTCAAAG GTATCGTATT TAAGTTGCAA TCACGCGATG AAGTTACTAT CAATTTGCGT 
AAAGAAGGCC CAGGCGTTGT TACAGCAAAA GATATCGACT TGCCACATGA TGTAGAAATC 
ATGAATCCTG ATCATGTAAT CGCCCATTTG TCAGCTGGTG GCAAATTGGA TATGCAGATC 
AAGGTTGAAA AAGGCCGCGG CTATGTTCCA GGTAACGTAC GTCAATACAA CGACGAAACT 
ACTAAAATTA TTGGCCGCAT CGTTTTAGAT GCATCATTTA GCCCGGTTAG CCGTGTTAGC 
TATGCTGTTG AATCTGCCCG TGTTGAGCAA CGTACCGACC TCGATCGTTT AGTAATGACT 
ATCGAAACAA ACGGTGTGTT GTCTCCTGAA GAAGCAATTC GTCAAGCAGC TAGTATTTTG 
GTTGATCAAT TAGTAGTATT CGCAGCTCTT GAGAGCAGCG AAGTTTCTGG CGATCTCGCA 
CCAAGCCGCT CTTCAATGGT TGATCCAATG TTGATGCGTC CGGTTGATGA TCTCGAGCTC 
ACAGTTCGCT CTGCAAACTG CTTGAAGGCT GAGAACATTT ACTACATCGG TGACTTGATT 
CAACGTACTG AGAATGAATT GTTGAAGACG CCTAATCTAG GTCGCAAGTC TTTGAATGAA 
ATCAAAGATG TATTAGCGGC TCGTGGCTTA AGTCTTGGCA TGAAACTCGA AAGCTGGCCT 
CCAGCTAACC TCGAGAAATA A
 
Protein sequence
MQTNLLKPKI ISVEALTANQ AKVVMEPFER GYGHTLGNAL RRVLLSSMVG YAPTEVAIAG 
VVHEYSTLDG VQEDVVNLLL NLKGIVFKLQ SRDEVTINLR KEGPGVVTAK DIDLPHDVEI 
MNPDHVIAHL SAGGKLDMQI KVEKGRGYVP GNVRQYNDET TKIIGRIVLD ASFSPVSRVS 
YAVESARVEQ RTDLDRLVMT IETNGVLSPE EAIRQAASIL VDQLVVFAAL ESSEVSGDLA 
PSRSSMVDPM LMRPVDDLEL TVRSANCLKA ENIYYIGDLI QRTENELLKT PNLGRKSLNE 
IKDVLAARGL SLGMKLESWP PANLEK