| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0056 |
|---|
| Symbol | rplB |
|---|
| ID | 5053877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 62628 |
|---|
| End bp | 63458 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640470208 |
|---|
| Product | 50S ribosomal protein L2 |
|---|
| Protein accession | YP_001154842 |
|---|
| Protein GI | 145588245 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0090] Ribosomal protein L2 |
|---|
| TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000310724 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTGA TGAAGACAAA ACCGACCTCA CCAGGTCGTC GTTCAATGGT GAAGGTGGTC
AATCCTGACC TCCATAAAGG TAAACCTTTT GCACCATTGC TAGAGCCACA GTTCCAAAAA
GCGGGCCGTA ATAATAACGG TCACATCACT ACCCGTCATA AAGGTGGTGG TCATAAGCAT
CACTATCGTG TTGTTGACTT CAAACGCAAC GACAAAGATG GTATTCCAGC AAAAGTTGAA
CGCTTGGAAT ACGATCCAAA CCGCAGCGCA AACATTGCGT TGATCGTGTT TGCTGATGGT
GAGCGTCGTT ATATTCCTGC TGCTAAAGGT ATGACTGTTG GCCAATCTTT AATGAGCGGT
TCAGAAGCGC CAATCAAATC TGGAAACAAT TTGCCAATTC GCAATATTCC AGTTGGTAGC
ACAATTCACT GCGTAGAAAT CATGCCGGGT AAGGGTGCTC AAGTAGCCCG TTCTGCTGGT
GGTTCAGCAG TATTGTTAGC GCGTGAAGGT GTATACGCTC AGGTTCGTTT GCGTTCCGGT
GAAGTTCGCC GTGTTCTGAT TGAGTGCCGC GCCACCATTG GTGAAGTTGG TAACGAAGAG
CATAGCCTGA GAGTTATCGG TAAAGCAGGT GCAAATCGCT GGCGTGGTAT TCGCCCAACC
GTTCGCGGTG TGGCAATGAA CCCAGTAGAT CACCCACACG GTGGTGGTGA AGGTAAAACT
GGCGAAGGCC GTGTACCTGT ATCTCCATGG GGCACTCCAA CTAAAGGTTA TCGCACACGT
CGCAATAAGC GTACAACTTC GATGATCGTT CAACGTCGTC AAAAACGTTA A
|
|---|
| Protein sequence | MPLMKTKPTS PGRRSMVKVV NPDLHKGKPF APLLEPQFQK AGRNNNGHIT TRHKGGGHKH
HYRVVDFKRN DKDGIPAKVE RLEYDPNRSA NIALIVFADG ERRYIPAAKG MTVGQSLMSG
SEAPIKSGNN LPIRNIPVGS TIHCVEIMPG KGAQVARSAG GSAVLLAREG VYAQVRLRSG
EVRRVLIECR ATIGEVGNEE HSLRVIGKAG ANRWRGIRPT VRGVAMNPVD HPHGGGEGKT
GEGRVPVSPW GTPTKGYRTR RNKRTTSMIV QRRQKR
|
|---|
| |