Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0054 |
Symbol | rplD |
ID | 5051914 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 61694 |
End bp | 62314 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640470206 |
Product | 50S ribosomal protein L4 |
Protein accession | YP_001154840 |
Protein GI | 145588243 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000000793849 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACTTA AGCTTCTCCA GGACAACGGT ACTTTGGGTG CGGGCGTACA AGCTTCACCA GAAGTATTCG AACGTGAATA TAACGAAGCA TTGGTACACC AAGTTGTAGT GGCCTACCAA GCAAATGCGC GTAGCGGTAA CCGTGCGCAA AAAGACCGTG AGCAAGTTAA GCACACAACC AAAAAGCCTT GGCGTCAAAA GGGTACTGGT CGTGCACGTG CTGGTATGAG CTCTTCCCCG CTATGGCGTG GAGGTGGTCG TATATTCCCA AATTCTCCAG AAGAGAATTT CAGCCAAAAA GTAAACAAGA AAATGTATCG CGCTGGTATG AGATCAATTT TGTCTCAATT AGCTCGCGAA GGCCGTTTGA ATGTTGTAGA TCAATTTTCT CTTGACGCTC CAAAGACTAA AGTTTTAGCT GACAAAGTTA AAGCAATGGG CTTAGATTCA GTCTTGATTA TTGTTGATCA GGTTAGTGAG AACTTGTACT TGGCGTCACG CAACTTGCAT AAGGTTGCTG TATGTGAGCC ACAGCATGCC GATCCTTTAG CTTTGGTTCA ATACAAAAAA GTATTGGTTA GCAAAGCAGC GATCGCAAAA ATTGAGGAGT TGCTGAAATG A
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Protein sequence | MELKLLQDNG TLGAGVQASP EVFEREYNEA LVHQVVVAYQ ANARSGNRAQ KDREQVKHTT KKPWRQKGTG RARAGMSSSP LWRGGGRIFP NSPEENFSQK VNKKMYRAGM RSILSQLARE GRLNVVDQFS LDAPKTKVLA DKVKAMGLDS VLIIVDQVSE NLYLASRNLH KVAVCEPQHA DPLALVQYKK VLVSKAAIAK IEELLK
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