| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0047 |
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| Symbol | |
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| ID | 5053712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 51573 |
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| End bp | 55835 |
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| Gene Length | 4263 bp |
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| Protein Length | 1420 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640470199 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001154833 |
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| Protein GI | 145588236 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00198886 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCAT TGCTCGATTT ATTTAAGCAA ACGCAGGGTG ATGAGCAGTT TGATGTCATC
AAGATTGGTC TTGCATCCCC TGAGAAAATT CGCTCATGGT CTTTTGGTGA AGTACGCAAA
CCAGAAACCA TTAACTACCG GACTTTTAAG CCCGAGCGTG ATGGTTTGTT CTGCGCCAAG
ATTTTTGGAC CAACTAAAGA CTACGAGTGC TTATGCGGCA AGTACAAGCG CTTAAAGTTC
CGTGGCGTTA TCTGCGAGAA GTGCGGCGTT GAAGTTACGC TCGCCAAGGT ACGTCGTGAG
CGCATGGGCC ACATTGAGTT AGCTGCCCCT GTAGCGCACA TTTGGTTCTT GAAATCCTTA
CCATCCCGTT TGGGTATGGT TCTCGATATG ACATTGCGTG ATATCGAGCG CGTTCTTTAC
TTTGAAGCTT ATGTAGTCGT TGATCCTGGC ATGACTCCTG AAGGCGCGAT GAAGCGCGGT
CAGATCATGT CTGAAGATGA GTACATTGCC AAGACTGAAG AGTATGGTGA CGGTGCATTT
ACTGCCATCA TGGGCGCGGA AGGTATTCGT GACCTCTTGC GCGGTATCGA TATCGATCGT
GAAGTAGAGA CGATTCGTGC CGATTTGAAA GCTACTGGTA GCGATGCCAA GATCAAGAAA
TACGCTAAGC GCTTAAAAGT GCTCGAGGCG TTCCAGACTT CAGGTATTAA GCCTGACTGG
ATGATCATGG AAGTGTTGCC AGTATTGCCA CCAGAGTTGC GCCCATTGGT GCCATTGGAT
GGCGGTCGCT TCGCTACTTC CGATTTGAAC GACCTCTACC GTCGTGTGAT CAACCGTAAC
AATCGTTTGA AGCGTTTGTT AGAGTTGCGC GCACCAGAGA TCATCGTTCG TAACGAAAAA
CGCATGTTGC AGGAAGCGGT TGACTCATTG CTCGACAACG GTCGTCGCGG TAAGGCTATG
ACTGGCGCTA ACAAGCGTCC GTTGAAGTCC TTGGCTGAGA TGATTAAAGG TAAGAGCGGT
CGTTTCCGTC AAAACTTGTT GGGTAAACGT GTTGACTACT CAGGTCGTTC AGTCATCGTG
GTTGGCCCGA CATTGAAATT GCATCAGTGC GGCTTACCAA AATTGATGGC CTTGGAATTG
TTCAAGCCAT TCATTTTCAA CAAGCTCGAG ACTTTGGGAA TCGCAACTAC TATTAAGGCT
GCGAAGAAAG AGGTTGAAAG TCAGACTCCA ATCGTTTGGG ACATTCTCGA AGAAGTGATT
CGTGAACATC CAATCATGTT GAACCGTGCG CCTACATTAC ACCGTCTCGG TATTCAGGCT
TTCGAGCCAA TGCTGATTGA AGGTAAGGCG ATCCAATTGC ACCCATTAGT CTGCGCGGCA
TTTAACGCCG ACTTTGACGG TGACCAAATG GCGGTTCACG TTCCTTTGTC GCTCGAAGCA
CAAATGGAGG CGCGTACATT GATGTTGGCT TCGAACAACG TATTGTTCCC AGCTAACGGC
GAACCATCTA TCGTTCCTTC ACAGGACGTG GTGTTAGGTC TGTACTACGC TACTCGTGAC
AAGATCAATG GTAAAGGCGA AGGCATGGTT TTCGCTAATA TCGCTGAAGT CATTCGTGCA
CATGAAGCTG GCCAGGTTGA ATTGGCTTCA CGCGTTGCTG TGCGTATTAC TGAGTTTGAG
ATTGTGGATA AGAAAGCAGA GGGCGATGCC CGTTTTGCTG AAAAGACCAA GATCTATCAA
ACTTCAGTTG GCCGTGCAAT CTTGTCAGAA ATCTTGCCTA AGGGTATGAC TTTTGAGGAA
ATCAATAAGC CTCTGAAGAA AAAAGAAATC TCACGTTTGA TAAACACTTC ATTCCGTAAG
TGCGGTCTCC GTGAAACAGT TATTTTTGCT GACCGTCTCT TGCAGTCTGG TTTCCGCTTG
GCAACAAATG CTGGTATCTC GGTTGCAATC GACGATATGC TGATTCCTAC CTCTAAAGAG
CGCATCATCA CTGAAGCCAC TAACAAGGTT AAAGAGTATG ACAAGCAGTT CATGTCAGGT
CTCGTAACCA ATCAAGAGCG TTATAACAAC GTGGTTGATA TTTGGGGCGC AGCTGGCGAC
CAAGTTGGCA AAGCGATGAT GGATGAGTTA TCGCACGTTG ACGTACTCGA CCGTAACAGT
AAAACTGTGC GTCAAGAATC CTTTAACTCT ATCTATATGA TGGCGGATTC TGGTGCACGT
GGATCTGCAG CGCAGATTCG TCAGTTGGCC GGTATGCGTG GTTTGATGGC GAAGCCTGAT
GGCTCCATTA TTGAAACCCC AATTACTGCG AACTTCCGTG AAGGCTTGAA CGTATTGCAG
TACTTCATCT CAACCCACGG TGCTCGTAAA GGTCTAGCCG ATACGGCATT GAAGACAGCG
AACTCAGGTT ACTTGACACG TCGTTTGTGC GACGTAACTC AAGACCTCGT TGTGATCGAA
GATGATTGCG GTGCAACTTC AGGCGTAACA ATGAAGGCTC TCGTAGAGGG CGGCGAAATT
ATCGAAGCAT TGCGCGATCG TATTTTGGGT CGTGTATGTA TCGGTGACAT CGTTCATCCA
GATACACAAG AAGTTATTGT TGCTAACGAC ACATTGCTCG ACGAGGATCA CGTAGATCAA
ATCGTTGCTT TAGGCATTGA TGAAGTGAAA GTTCGCACAG TATTGTCATG CTTAACTCGC
TTTGGTTTGT GCGCTAAGTG CTACGGACGT GATTTAGGTC GCGGTGGTTT GGTAAACGTT
GGTGAGGCAG TTGGCGTGAT CGCTGCTCAG TCCATCGGTG AGCCAGGCAC ACAGTTGACT
ATGCGTACCT TCCACATTGG TGGTGCGGCG TCACGCGCTT TGGTTGCAAG CAATATTGAA
GCTAAGTCTA ATGGTGCGTT GAAGTTCTCT GGCACGATGC GTATTGTCAA GAACGCAAAA
GGTGAGCAGA TCGTGATTTC ACGTTCTGGT GAAGCTTTGA TCATTGACGA TAACGGCCGT
GAGCGTGAGC GTCATAAAGT GCCTTACGGC GCAACTCTCT TGTTCAAAGA AGATGCTGCA
GTCAAGGCAG GCGCAAGCTT GGCAACATGG GATCCGTTAA CACGTCCAAT CATTTCTGAG
TACGCTGGTA TTGCTCGCTT CGACAACGTT GAAGAAGGCG TTACTGTAGC CAAGCAGGTT
GACGAAGTAA CTGGTCTCTC CACCTTGGTG GTGATTGATG GTAAGCGTCG TAGTGCTGCT
AGCAAAGGCG TTCGTCCAAT GATCAACTTA GTTGATGACA AGGGCGGCGA AGTGATGATT
GCGGGCACAG ATCACCCGGT AAACATTGGC TTGCAAGTTG GCGCTTTGAT CACTGTTAAA
GATGGTCAAA AAGTTGAAGT TGGTGAAGTA TTAGCGCGTA TTCCAATCGA ATCACAGAAG
ACTCGCGATA TTACCGGTGG TTTGCCACGC GTTGCAGAAT TGTTCGAAGC ACGTTCACCA
AAAGATGCTG CTGTATTGGC GAAAGTTACC GGTACAGTTT CCTTCGGCAA AGAAACCAAA
GGTAAGCAGC GCTTGGTTAT TACCGATATG GACGGCGAAG CCAATGAATT CTTGATTCCT
AAAGAGAAGC AAGTTCTCGT TCATGACGGT CAAGTTGTGA ACAAGGGCGA GATGATTGTG
GAAGGTCCTG CTGATCCACA CGATATCTTG ACACTCAGGG GTATTGAAGA GTTAGCTATC
TACATCGTTG ACGAAGTTCA AGACGTTTAC CGTTTGCAAG GCGTGAAGAT TAACGACAAG
CACATCGAAG TTATCGTGCG TCAAATGTTG CGTCGTGTGC AAATCACTGA TGGTGGCGAT
ACTGCCTACA TCACTGGTGA GCAAGTTGAG CGTTCAAAAC TGTATGACGC TAACGATTTG
GTCATTGCTG CAGGTAAGCG CCCAGCTCAG TTTGAGAACG TTTTATTGGG CATTACCAAG
GCATCTTTGT CGACCGACAG CTTCATTTCA GCGGCTTCTT TCCAAGAAAC CACCCGTGTA
TTGACCGAAG CCGCAATTAT GGGCAAGACC GATACACTCC GTGGCCTCAA GGAAAACGTC
ATTATTGGTC GTCTGATCCC TGCGGGTACT GGCTTGTCTT ACCGCCGTGC ACGCAAGGTC
AGAGAGCAAT TCGAGCGTGA CCGCGCTCAG ATGATTGCTG CCGAAGAGGA GGCAATTGCT
AATACGCCTG TAGAAATAGA GGCTGAAGTC ATTGCTCCTG CTGGGGAGGC TGATCCAAGC
TAA
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| Protein sequence | MKALLDLFKQ TQGDEQFDVI KIGLASPEKI RSWSFGEVRK PETINYRTFK PERDGLFCAK
IFGPTKDYEC LCGKYKRLKF RGVICEKCGV EVTLAKVRRE RMGHIELAAP VAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAYVVVDPG MTPEGAMKRG QIMSEDEYIA KTEEYGDGAF
TAIMGAEGIR DLLRGIDIDR EVETIRADLK ATGSDAKIKK YAKRLKVLEA FQTSGIKPDW
MIMEVLPVLP PELRPLVPLD GGRFATSDLN DLYRRVINRN NRLKRLLELR APEIIVRNEK
RMLQEAVDSL LDNGRRGKAM TGANKRPLKS LAEMIKGKSG RFRQNLLGKR VDYSGRSVIV
VGPTLKLHQC GLPKLMALEL FKPFIFNKLE TLGIATTIKA AKKEVESQTP IVWDILEEVI
REHPIMLNRA PTLHRLGIQA FEPMLIEGKA IQLHPLVCAA FNADFDGDQM AVHVPLSLEA
QMEARTLMLA SNNVLFPANG EPSIVPSQDV VLGLYYATRD KINGKGEGMV FANIAEVIRA
HEAGQVELAS RVAVRITEFE IVDKKAEGDA RFAEKTKIYQ TSVGRAILSE ILPKGMTFEE
INKPLKKKEI SRLINTSFRK CGLRETVIFA DRLLQSGFRL ATNAGISVAI DDMLIPTSKE
RIITEATNKV KEYDKQFMSG LVTNQERYNN VVDIWGAAGD QVGKAMMDEL SHVDVLDRNS
KTVRQESFNS IYMMADSGAR GSAAQIRQLA GMRGLMAKPD GSIIETPITA NFREGLNVLQ
YFISTHGARK GLADTALKTA NSGYLTRRLC DVTQDLVVIE DDCGATSGVT MKALVEGGEI
IEALRDRILG RVCIGDIVHP DTQEVIVAND TLLDEDHVDQ IVALGIDEVK VRTVLSCLTR
FGLCAKCYGR DLGRGGLVNV GEAVGVIAAQ SIGEPGTQLT MRTFHIGGAA SRALVASNIE
AKSNGALKFS GTMRIVKNAK GEQIVISRSG EALIIDDNGR ERERHKVPYG ATLLFKEDAA
VKAGASLATW DPLTRPIISE YAGIARFDNV EEGVTVAKQV DEVTGLSTLV VIDGKRRSAA
SKGVRPMINL VDDKGGEVMI AGTDHPVNIG LQVGALITVK DGQKVEVGEV LARIPIESQK
TRDITGGLPR VAELFEARSP KDAAVLAKVT GTVSFGKETK GKQRLVITDM DGEANEFLIP
KEKQVLVHDG QVVNKGEMIV EGPADPHDIL TLRGIEELAI YIVDEVQDVY RLQGVKINDK
HIEVIVRQML RRVQITDGGD TAYITGEQVE RSKLYDANDL VIAAGKRPAQ FENVLLGITK
ASLSTDSFIS AASFQETTRV LTEAAIMGKT DTLRGLKENV IIGRLIPAGT GLSYRRARKV
REQFERDRAQ MIAAEEEAIA NTPVEIEAEV IAPAGEADPS
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