Gene Pnuc_0036 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0036 
Symbol 
ID5052987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp34672 
End bp35322 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content42% 
IMG OID640470179 
Producttransport-associated 
Protein accessionYP_001154822 
Protein GI145588225 
COG category[R] General function prediction only 
COG ID[COG2823] Predicted periplasmic or secreted lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0240953 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTATTC AATTTATCAG CAAATTATTC ATTGCAGCAT TACTTGTTTC GCAACTATCA 
GCATGCGCAG TAGTGGCGAT AGGCGGCGTT ACTGCAAGCG CTGCGATTCT TGCTGACCGT 
CGTTCTCCAG CTGTTCAGGC AATTGATAAA GGTATTGAGT TACAGGCTGA GAATGCTTTA 
GCTAAACGCT TTGGCGATAG CGCACACATT AACGTAACAT CCTTCAATCA GAAAGTCCTG 
TTAACTGGCG AAGTAAAAGA TGCTGATATC AAAGGTGAGG CAGGTGCATA TGTAAAGGCA 
ATGAAAAATG CGCGTTCAGT ATTTAATGAG CTTGTGATTG GCCCCAACAG CACGTTCTCT 
TCCCGTGCAA ATGATTCATA TTTAGAGTCA TCAATTAAAA CTCAAATGAT CTTTACAGAT 
AAGCTGCCTT CAAATTCCAT GGCGATTGTG GCTGAGGGCG GAAGTGTTTA TTTGATGGGC 
ATCCTTACAC AAAACGAAGC TGATTTAGCG AAGAAGGTTG CCAGTAATAC TAGCGGCGTG 
AAAGATGTGT ATGCATACTT TGATATTATT TCCGAGCAAG AAAAAGCTCG CTTAGAGAAG 
CAAGGTAAAG CCGATGAGTC ACAGCCAAAC AGCCCACCAA AATATCAATA A
 
Protein sequence
MRIQFISKLF IAALLVSQLS ACAVVAIGGV TASAAILADR RSPAVQAIDK GIELQAENAL 
AKRFGDSAHI NVTSFNQKVL LTGEVKDADI KGEAGAYVKA MKNARSVFNE LVIGPNSTFS 
SRANDSYLES SIKTQMIFTD KLPSNSMAIV AEGGSVYLMG ILTQNEADLA KKVASNTSGV 
KDVYAYFDII SEQEKARLEK QGKADESQPN SPPKYQ