Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0028 |
Symbol | |
ID | 5052731 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 26211 |
End bp | 27320 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640470170 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_001154814 |
Protein GI | 145588217 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCTGTTAA ATGATCGGTT TTTAAAGGCC TGCCTGGGCG AAGCGGTTGA TCAAACACCG CTTTGGCTCA TGCGCCAGGC CGGCCGATAT CTCCCAGAGT ACAACGCTAC ACGCGCCAGA GCCGGAAGTT TTCTTGGGCT CGCAAAAAAT CCTGCTTATG CTACTGAGGT AACTCTTCAA CCTTTGGATC GCTATCCACT GGATGCGGCA ATTTTATTCT CTGACATTTT GACCATTCCT GATGCCATGG GATTGGGCTT GAAATTCACT GCGGGCGAGG GGCCTAGTTT TGAGCATCCA TTGCGCACCG AAGACGATGT CAAGAAATTG CGCGTTGCAG ATATGGATCA GCTGAAATAT GTTTTTGAAG CTGTTTCAGA AATTCGTAAA GCGCTCATTC AGTATGGCAA GCAGCGCGTT CCTTTGATAG GCTTTTCCGG AAGCCCTTGG ACATTGGCCT GCTACATGAT TGATGGTTCG AGCGCTGATG ATTTCCGCCA CGCTAAAACG ATGATGTTTA GTCGTCCTGA TTTGATGCAA CAAATTTTAG ATATCAATAT TCAATCAGTA GCGAATTATC TAATTGAGCA GGTGAAGGCT GGTGCACAAG CGCTCATGAT TTTTGATACT TGGGGCGGAA TGCTTCCAGA TGGTTGGTAT CAAAGAGTTT CTTTGGCAGC GATGCAAAAA GTGATTGCAC TGTTACCTCG AGAATATGAA GGCCAAAAGA TTCCCGTGAT TATGTTCACA AAGGGCGGTG CAATTTGGCT CAATGATATG GCGCAAATTG GTGCTGATGT CATTGCAATG GATTGGACAA TGTCCCTAAG CCGTGCTCGT AAACAGTTGC TCGCATTAAA TAAGCCTTTG GCGTTACAGG GAAACTTAGA CCCCCTGATC CTGTTCTCGG AGCCCGAACA AATTGCCCGT CAAGCAAGCC TGCTTTTAGA TGATTTGGCG AGCGCTCCGC CTCTGAAGGC GGGGTTGCAT TCATTGGACG GGCATATATT TAATTTGGGG CACGGAATCT CTCAGTTCAC CCCACCAGAA AGCGTTACCG CCTTATCTCA GGCAGTGATA AAGCACTCTA GGTCTCTTAG ATCTAAGTAG
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Protein sequence | MLLNDRFLKA CLGEAVDQTP LWLMRQAGRY LPEYNATRAR AGSFLGLAKN PAYATEVTLQ PLDRYPLDAA ILFSDILTIP DAMGLGLKFT AGEGPSFEHP LRTEDDVKKL RVADMDQLKY VFEAVSEIRK ALIQYGKQRV PLIGFSGSPW TLACYMIDGS SADDFRHAKT MMFSRPDLMQ QILDINIQSV ANYLIEQVKA GAQALMIFDT WGGMLPDGWY QRVSLAAMQK VIALLPREYE GQKIPVIMFT KGGAIWLNDM AQIGADVIAM DWTMSLSRAR KQLLALNKPL ALQGNLDPLI LFSEPEQIAR QASLLLDDLA SAPPLKAGLH SLDGHIFNLG HGISQFTPPE SVTALSQAVI KHSRSLRSK
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