Gene Pnuc_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0028 
Symbol 
ID5052731 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp26211 
End bp27320 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content47% 
IMG OID640470170 
Producturoporphyrinogen decarboxylase 
Protein accessionYP_001154814 
Protein GI145588217 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01464] uroporphyrinogen decarboxylase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCTGTTAA ATGATCGGTT TTTAAAGGCC TGCCTGGGCG AAGCGGTTGA TCAAACACCG 
CTTTGGCTCA TGCGCCAGGC CGGCCGATAT CTCCCAGAGT ACAACGCTAC ACGCGCCAGA
GCCGGAAGTT TTCTTGGGCT CGCAAAAAAT CCTGCTTATG CTACTGAGGT AACTCTTCAA
CCTTTGGATC GCTATCCACT GGATGCGGCA ATTTTATTCT CTGACATTTT GACCATTCCT
GATGCCATGG GATTGGGCTT GAAATTCACT GCGGGCGAGG GGCCTAGTTT TGAGCATCCA
TTGCGCACCG AAGACGATGT CAAGAAATTG CGCGTTGCAG ATATGGATCA GCTGAAATAT
GTTTTTGAAG CTGTTTCAGA AATTCGTAAA GCGCTCATTC AGTATGGCAA GCAGCGCGTT
CCTTTGATAG GCTTTTCCGG AAGCCCTTGG ACATTGGCCT GCTACATGAT TGATGGTTCG
AGCGCTGATG ATTTCCGCCA CGCTAAAACG ATGATGTTTA GTCGTCCTGA TTTGATGCAA
CAAATTTTAG ATATCAATAT TCAATCAGTA GCGAATTATC TAATTGAGCA GGTGAAGGCT
GGTGCACAAG CGCTCATGAT TTTTGATACT TGGGGCGGAA TGCTTCCAGA TGGTTGGTAT
CAAAGAGTTT CTTTGGCAGC GATGCAAAAA GTGATTGCAC TGTTACCTCG AGAATATGAA
GGCCAAAAGA TTCCCGTGAT TATGTTCACA AAGGGCGGTG CAATTTGGCT CAATGATATG
GCGCAAATTG GTGCTGATGT CATTGCAATG GATTGGACAA TGTCCCTAAG CCGTGCTCGT
AAACAGTTGC TCGCATTAAA TAAGCCTTTG GCGTTACAGG GAAACTTAGA CCCCCTGATC
CTGTTCTCGG AGCCCGAACA AATTGCCCGT CAAGCAAGCC TGCTTTTAGA TGATTTGGCG
AGCGCTCCGC CTCTGAAGGC GGGGTTGCAT TCATTGGACG GGCATATATT TAATTTGGGG
CACGGAATCT CTCAGTTCAC CCCACCAGAA AGCGTTACCG CCTTATCTCA GGCAGTGATA
AAGCACTCTA GGTCTCTTAG ATCTAAGTAG
 
Protein sequence
MLLNDRFLKA CLGEAVDQTP LWLMRQAGRY LPEYNATRAR AGSFLGLAKN PAYATEVTLQ 
PLDRYPLDAA ILFSDILTIP DAMGLGLKFT AGEGPSFEHP LRTEDDVKKL RVADMDQLKY
VFEAVSEIRK ALIQYGKQRV PLIGFSGSPW TLACYMIDGS SADDFRHAKT MMFSRPDLMQ
QILDINIQSV ANYLIEQVKA GAQALMIFDT WGGMLPDGWY QRVSLAAMQK VIALLPREYE
GQKIPVIMFT KGGAIWLNDM AQIGADVIAM DWTMSLSRAR KQLLALNKPL ALQGNLDPLI
LFSEPEQIAR QASLLLDDLA SAPPLKAGLH SLDGHIFNLG HGISQFTPPE SVTALSQAVI
KHSRSLRSK