Gene Pnuc_0027 details

Gene Information

• Locus tag: Pnuc_0027
• Symbol: atpC
• ID: 5052719
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 25779
• End bp: 26195
• Gene Length: 417 bp
• Protein Length: 138 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640470169
• Product: F0F1 ATP synthase subunit epsilon
• Protein accession: YP_001154813
• Protein GI: 145588216
• COG category: [C] Energy production and conversion
• COG ID: [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
• TIGRFAM ID: [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria)

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.155859
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAACCA TACGCGTCGA TGTAGTAAGT GCTGAGCAGT CTATTTTCAG CGGGGAAGCT 
AAGTTTGTAG CGCTTCCTGG TGAAAGTGGT GAGCTCGGCA TTTTGCGCGG CCACACTCCT 
TTGATTACAC GTATTCGTCC AGGCTCAGTT CGCATTGAAA AAGCCGATGG TGATGAAGAA 
TTTGTTTTCG TAGCGGGCGG CTATTTAGAG GTTCAGCCAG ATCGCGTTAC CGTGCTAGCA 
GATACTGCTA TTCGCGGTCA TGATCTTGAT GAAGCTAAAG CAATTGAAGC TAAGAAACGT 
GCTGAAGAGG CGATGCAAAA TCGTGGCACA GACTTTGATA TGGCCCTGGC CCAGTCTGAG 
TTTGCAATGG CGGCTGCACA GTTGGCTGCA ATTGCACGTT TCCGTCGTAA AAAGTAA 

 

Protein sequence

MSTIRVDVVS AEQSIFSGEA KFVALPGESG ELGILRGHTP LITRIRPGSV RIEKADGDEE 
FVFVAGGYLE VQPDRVTVLA DTAIRGHDLD EAKAIEAKKR AEEAMQNRGT DFDMALAQSE 
FAMAAAQLAA IARFRRKK