| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_2310 |
|---|
| Symbol | radA |
|---|
| ID | 5055446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | + |
|---|
| Start bp | 2066247 |
|---|
| End bp | 2067248 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640469862 |
|---|
| Product | DNA repair and recombination protein RadA |
|---|
| Protein accession | YP_001154506 |
|---|
| Protein GI | 145592504 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0468] RecA/RadA recombinase |
|---|
| TIGRFAM ID | [TIGR01954] transcription termination factor NusA, C-terminal duplication
[TIGR02236] DNA repair and recombination protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.469487 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.00856648 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTCTTCGA AGAAGAAAAA GACCGACGCA GAGGCGGCAC AAGTACAGGC CGCCGTAGAG
GTAAGCCCCG ACCTAGATGT GGAGGAGCTG GAGGGCGTGG GCAAAGTCAC CGGCGCGAAG
CTTAAGGAGA AGGGCTTCTA CACCGTCAAG GACGTTGCCT TCGCCTCGGT GAAGGAGCTG
GCGGAGATCA TAGGCAATGA GGAGAGGGCG CTCCAGATAA TCGAGTCGGC GAGGAAGATG
CTCGGCCTAC ACTCCTTCAT ATCTGCGCTG GAGGTTTACG AAAGGCGCAA GAAGATAAGG
CGCATCTCGA CAGGTGTGAG GTCGCTAGAC GAACTGCTAG GCGGCGGCAT AGAGACGAGG
GCCGTAACCG AGGTTGTCGG CGAATTCGGC TCTGGTAAGA CTCAGCTCTG CCATCAGCTG
GCTGTAATGG TCCAACTCCC AGAAGAAAGA GGCGGGCTGG GGGCAAAGGC CATATATATC
GATACGGAGA ACACCTTTAG GCCGGAGCGC ATTATGCAGA TGGCGCGGGC CAGAGGCCTA
GATCCAGACC AAGCCCTTAA CAACATCTTC TACGCAAGGG CGTACAGCTC CGACCACCAG
ATGATACTGG TAGAACATGC CAAATCGATA GTTAAGCAAC ACAACGTGGC CCTCATCGTA
GTGGACTCGG TAATAGCCCA CTTCCGCTCC GAATTCCCCG GCAGGGAGAA CCTAGCCGAG
AGACAACAAA AGCTGAACAA ACACGTGGCC GACCTGCTCC GCCTAGCTGA CGCCTACGAC
GTCGCCGTCG TTATCACAAA TCAAGTGATG GCCCAGCCAG ACGTCTTCTT CGGGAACCCA
CTGAGACCAG CCGGCGGAAA TATCTTGGCA CACGGCGCCA CATACCGTCT CTGGCTGAGA
AAGTCCAAGG AGAATATCAG AATAGTGAAG ATATTCGACT CGCCATACCA CCCAGAGGGG
GAGGTATCGT TTAGAATTAC TGAGGAAGGC CTAATTGATT AA
|
|---|
| Protein sequence | MSSKKKKTDA EAAQVQAAVE VSPDLDVEEL EGVGKVTGAK LKEKGFYTVK DVAFASVKEL
AEIIGNEERA LQIIESARKM LGLHSFISAL EVYERRKKIR RISTGVRSLD ELLGGGIETR
AVTEVVGEFG SGKTQLCHQL AVMVQLPEER GGLGAKAIYI DTENTFRPER IMQMARARGL
DPDQALNNIF YARAYSSDHQ MILVEHAKSI VKQHNVALIV VDSVIAHFRS EFPGRENLAE
RQQKLNKHVA DLLRLADAYD VAVVITNQVM AQPDVFFGNP LRPAGGNILA HGATYRLWLR
KSKENIRIVK IFDSPYHPEG EVSFRITEEG LID
|
|---|
| |