| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_2140 |
|---|
| Symbol | |
|---|
| ID | 5056178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | + |
|---|
| Start bp | 1916517 |
|---|
| End bp | 1917533 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640469692 |
|---|
| Product | ABC transporter periplasmic-binding protein |
|---|
| Protein accession | YP_001154338 |
|---|
| Protein GI | 145592336 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4143] ABC-type thiamine transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATAA GAAATTTATT GATTGTGCTC ATAGCGGTCG CTGGGGTGAT AGTGGCATTC
CTAACGATAT CTGCTTTTCA GCAACCGCAG ACAAAGAAGC TCGTTATTGT CGGCCCCGCG
GGCATAAGCG ACTTAGGGCA GGCGTTGGCG AAAAAGTTCA GTGAGAAGTA TGGGGTGAAC
GCCACGTTTA TCCCACTTGG TGGGGCGGTA GAGATGGTGA ACGAGCTGGT GAGGAACAAG
GACAACCCAC CATGGGACGT CGCCATTGGG ATTCCGGAGT TTTACTACAC TGTGTTAGTG
GAAAGGGGTG TTTTACACTG TCCCAAGTTG TCTGTGGAGG GAGTCCCCCC CGAGGAGTTT
TGGGATCCCA ACGGTTGCGT GTACCCGCTG GATAAGTCCT ACATCGGCAT TGTATACAAC
GCCACTGCCC TCGAGAGGCT TGGGCTAAGG CCTCCAGAGA CGCTGGACGA CTTACTTAGG
CCGGAGTACA AGGGGCTAGT AACATATCCC AACCCAGTCC AGTCGGGCAC CGGGCTTGCC
GTCCTCTCGT GGATAATGTC AGTAAAGGGA GAAGAGGCAG GGTGGACATA TTTGAAACAG
CTCAGCGGCC AAATAGCCAA GGTGGGGTAT CCCAGCGGCT TTACGGCTTT GAGAAGCGCC
CTAAAACGTG GCGACGTGGT TATAGCGCTT TCATGGTACA GCCACGTGAT TGATCCTGGA
ACCCCTCACA TGAGGGCTGC CACTTACAGC GCCTTTTTGT ATAGAGAGGG CGTGGCAGTG
CTTAAAAATG CCAAAAACCG CGACTTAGCC GTGGAATTTG TTAAATTCGC CCTAAGCAAA
GAGGGGCAGG ACCTAGTAGA TCCTTACAAC TACATGCTCC CCGTCAGGGC AGACGCCGTG
GTGAAGAACA ACGTGGGCCT TCCCCAGCCG CGGTCGGTGG TGGTCTACAA CCCTGCCCTC
GGCTCCAAGG CAGACGAGTG GAGGCTGAGG TGGCAGAGGG AGGTCGCTTC AGGTTAA
|
|---|
| Protein sequence | MSIRNLLIVL IAVAGVIVAF LTISAFQQPQ TKKLVIVGPA GISDLGQALA KKFSEKYGVN
ATFIPLGGAV EMVNELVRNK DNPPWDVAIG IPEFYYTVLV ERGVLHCPKL SVEGVPPEEF
WDPNGCVYPL DKSYIGIVYN ATALERLGLR PPETLDDLLR PEYKGLVTYP NPVQSGTGLA
VLSWIMSVKG EEAGWTYLKQ LSGQIAKVGY PSGFTALRSA LKRGDVVIAL SWYSHVIDPG
TPHMRAATYS AFLYREGVAV LKNAKNRDLA VEFVKFALSK EGQDLVDPYN YMLPVRADAV
VKNNVGLPQP RSVVVYNPAL GSKADEWRLR WQREVASG
|
|---|
| |