Gene Pars_1741 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPars_1741 
Symbol 
ID5054970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum arsenaticum DSM 13514 
KingdomArchaea 
Replicon accessionNC_009376 
Strand
Start bp1567403 
End bp1567966 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content53% 
IMG OID640469284 
Product2'-5' RNA ligase 
Protein accessionYP_001153944 
Protein GI145591942 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.000285675 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAACCTCG TCAGATCTTT TATCGCAGTA GACATCGACG CCCCAGACGT CGTGAAGAGA 
ATCGAGGAGG TTCAACGCGA GGTGGTGAGA CTCGGCTTAG ACATAAAGCT CGTGGAAAGG
GAAAACCTGC ACATAACTCT CCGCTTCCTT GGGGAAATAC CCCAGCAGAG GGTTAACGAT
GTGATACGCG CGTTGTCCAC GGTGAAGTTC GCCAAGTTTG AGATGAGGCT TGCAGACCTC
GGTGTTTTCC CCGATTTGTC GAGGCCGCGG GTTTTGTGGG TAGGCGTATC CCAAGGCGCG
GAGGCGCTGG CCAACCTAGC GAATGCGGTT AGGGCGGCTG TGGATAAGTA TGCAGAACAC
GAGGAGGAGA GAGAATTCAC GCCGCATTTG ACCATCGGCC GGATTAAGAG TAGTAGAAAT
GTAGACCGGC TCGGGGATTT GATACGCCGC TACAAGGGAG TGGAGTTTGG CGTAGTAGTC
GTTGACAAGG TGAAGTTAAA AAGGTCGGTG CTTACGCCGA GGGGACCTAT TTATAGCGAC
CTATTTGTTG TTCCACTTAC GTGA
 
Protein sequence
MNLVRSFIAV DIDAPDVVKR IEEVQREVVR LGLDIKLVER ENLHITLRFL GEIPQQRVND 
VIRALSTVKF AKFEMRLADL GVFPDLSRPR VLWVGVSQGA EALANLANAV RAAVDKYAEH
EEEREFTPHL TIGRIKSSRN VDRLGDLIRR YKGVEFGVVV VDKVKLKRSV LTPRGPIYSD
LFVVPLT