| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_1500 |
|---|
| Symbol | |
|---|
| ID | 5056094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | - |
|---|
| Start bp | 1358506 |
|---|
| End bp | 1360008 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640469042 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_001153708 |
|---|
| Protein GI | 145591706 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.112242 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATCA AATTGCCGTC ACGAGGTTTA AGTAAAGAGG AGATATTGCA AAAGTTGAGA
GGATACTCTG CTGATGATGC TGACCCCTTT AGTGGTAAGT TATTTACCAT AGCTTTTGAG
CCTGGTGTTA ACGAGCTTAG AGAAATTGCT TTTGAGGCGA TGAAAATGTT TGCCTTCAAA
AATATCCTTG ACTTTACGGA GTTTCCCAGC GCGATAAGAA TGGAGAAAGA CATCGTAGAT
ATAGCGAAAT CCTTAATGCA GGGAGATGAA GAAGTTACGG GTACTTTCAC TTTTGGCGGC
ACGGAGAGTA TTTTTCTTGC GGTGAAAGCG GCGAGGGATA GATTTCTACT TAGCAGAGGC
ACTATTACAA TACCAGAGAT AGTAATGCCT GTTACGGGGC ACCCAGCATA TGATAAGGCG
GCTGAATATA TGGGTCTCAG AGTTAAAAGA GTAAGGGTCG ACGAGAAAAC GCTAACTGCT
GATGTTAATG CAATAAACGA GGCGATTACA GAAAACACTG CCATGATCGT GGCGTCGGCC
CCTAATTGGC CTTTTGGCAC TATAGATCCA GTGAAAGAGC TGGCTGATCT GGCTCTGGAA
AAGAATATAT GGCTACATGT AGATGCATGT GTTGGTGGGT TTGTATTGCC CTTCATGAAA
AAGCTGGGTG AGAACATCCC TAGCTTTGAT TTTAGTATTG AGGGAGTTAC ATCTATCTCG
CTAGATCCGC ATAAATATGC ATATACACCA ATTGGCGCAT CAGTAATACT CTTTAAAAAG
AAGTTTTACA AGATGTTTTC TCAATATGCA AATCTTAGAT GGCCTGGGTA TCCGATAGTA
AATCCGGCTG TTCTTTCTTC TCGTACAGAG GCCACGCTAG CGGCGGCTTG GGCTGTTCTA
CACTTCCTAG GCGAGGAGGG TTACACAGAA CTGGCGAGGC GAATCATAGT TGCGAGAAAT
AAAATAGTGA GGGGTCTCAG GGAATTGGGT TATAATATTA TGGGTGAGCC TACAGTTATT
GCCGCTTTTA CCTCAAGTGA GCTTAACTTA TTTAGATTAA GTGATGAAAT GGGTAAGAGA
GGTTGGTTAT TGCTCCCACA GAAAGGGATA CCAAATATGA ATATTCCCCC GAGTATCCAT
CTAACAATAA CTCCGATACA TGACAAGCTC GCAGATATTA TGCTTGGTGA TTTGAAAACA
GCCACTGAAG AGGTTAAAAG GCTACCTCCC AGCGAAGCAG AGGGCTTGTT AGAGATCTTC
ACTGCTGTGT TTAGCATGAT AACCCCAGGT GAAATGGACC TGGCAACGCT GGGAAGAATC
TTTGCAGAAC TAGAAAAGAC TCTAAGCACG TATGGTGATA GGATATTGAA GATATTGGGT
TTAGAAAAGG GCTTTCCTAA AGAGATGGCA ATGATATACC AACTCCTTGC CTCGCTTCCA
CCTGAAATAG CAGAATTGCT AGCTAACTAT GTCGTAATTG AGATCTTCCA TAGAGGTATC
TAA
|
|---|
| Protein sequence | MTIKLPSRGL SKEEILQKLR GYSADDADPF SGKLFTIAFE PGVNELREIA FEAMKMFAFK
NILDFTEFPS AIRMEKDIVD IAKSLMQGDE EVTGTFTFGG TESIFLAVKA ARDRFLLSRG
TITIPEIVMP VTGHPAYDKA AEYMGLRVKR VRVDEKTLTA DVNAINEAIT ENTAMIVASA
PNWPFGTIDP VKELADLALE KNIWLHVDAC VGGFVLPFMK KLGENIPSFD FSIEGVTSIS
LDPHKYAYTP IGASVILFKK KFYKMFSQYA NLRWPGYPIV NPAVLSSRTE ATLAAAWAVL
HFLGEEGYTE LARRIIVARN KIVRGLRELG YNIMGEPTVI AAFTSSELNL FRLSDEMGKR
GWLLLPQKGI PNMNIPPSIH LTITPIHDKL ADIMLGDLKT ATEEVKRLPP SEAEGLLEIF
TAVFSMITPG EMDLATLGRI FAELEKTLST YGDRILKILG LEKGFPKEMA MIYQLLASLP
PEIAELLANY VVIEIFHRGI
|
|---|
| |