| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_0051 |
|---|
| Symbol | |
|---|
| ID | 5056063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | - |
|---|
| Start bp | 38939 |
|---|
| End bp | 39997 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640467631 |
|---|
| Product | isopentenyl pyrophosphate isomerase |
|---|
| Protein accession | YP_001152320 |
|---|
| Protein GI | 145590318 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
|---|
| TIGRFAM ID | [TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGATAG ACAAGAGGAA AAACGACCAC ATCTACCTCG CATCTTCTGA TCTATCCCAA
GTAGGCACGG CTCTTTTCGA GGAGGTTGTC CTAATACACA ACGCGTTGCC GGAAATAGAC
TTCTCAGATA TCGACCTCTC CACTAATTTC CTTGGGGCCC CCGTTAAGGC GCCTTTTGGA
ATTGGCGCTA TGACCGGAGG AACGGAGTTG GCAGGTAAAA TCAACGCGGA GTTGGCAAAA
GCCGCAGAGG AGTTTGGCAT ACCTATGTAC GTCGGGTCAC AGAGAATTGC GTTAGTGAAG
CCCGAGGTCA GGTGGACTTT TGAAGTGGTT AAGCAAAACG CGCCATCCAT TCCTAAGATT
GCCAATCTCG GTGCGCCGCA GTTGGCTCAG CTTTCTGAGA AACAGCTGGT GGACTGGGTT
GTGCAAGCTG TGGATATGAT AGACGCCTAC GCCGTGGCCG TCCACCTAAA CGCAGCGCAG
GAAGTGGTAC AACCGGAGGG GGAGCCCAGC TTCAGGGGCG TGTTGGAAAA ATTAAAAATT
GTCAAAAGGG CGGCAGGACG GCCACTCATA GTCAAAGAGG TGGGCAACGG CATATCGAAA
GAGGTGGCGG CGAAGCTGGC GGAGGTGGCA GACGCAATAG ATGTGGGGGG GCTTGGAGGG
ACTTCTTTTG TGGCGATTGA GGGCGCCAGG GCGGCCGATG CCTGGCTCCA AAGGCGGGTT
GCCGAGACGT TTAAGTATTG GGGAATACCC ACAGCTGCCT CTATCTGCGA GGTTAAATCC
GTGTATCGAG GCTTCGTAAT AGCGTCTGGC GGGATCAGAA GCGGACTAGA CGGAGCTAGG
GCTTTGGCGC TTGGCGCGCA CTTCTTCACA ATGTCCCAGC CACTCCTAAA AGCCACGCTT
GAGGGAAGAC TCCGTGAGGA GATAGAGGCG GTAATTACAG AGGTTAAAAT CGCCATGTTC
CTCACAGGAG TGCGCAGGCC GCAAGAACTG GCCCAAGTAC CCCGTGTCTA CGGCCCCAGG
CTGAGGGCTT GGCTAGAACA ACGAGGCACA ACTTGTTGA
|
|---|
| Protein sequence | MGIDKRKNDH IYLASSDLSQ VGTALFEEVV LIHNALPEID FSDIDLSTNF LGAPVKAPFG
IGAMTGGTEL AGKINAELAK AAEEFGIPMY VGSQRIALVK PEVRWTFEVV KQNAPSIPKI
ANLGAPQLAQ LSEKQLVDWV VQAVDMIDAY AVAVHLNAAQ EVVQPEGEPS FRGVLEKLKI
VKRAAGRPLI VKEVGNGISK EVAAKLAEVA DAIDVGGLGG TSFVAIEGAR AADAWLQRRV
AETFKYWGIP TAASICEVKS VYRGFVIASG GIRSGLDGAR ALALGAHFFT MSQPLLKATL
EGRLREEIEA VITEVKIAMF LTGVRRPQEL AQVPRVYGPR LRAWLEQRGT TC
|
|---|
| |