Gene OSTLU_10027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOSTLU_10027 
Symbol 
ID5005387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOstreococcus lucimarinus CCE9901 
KingdomEukaryota 
Replicon accessionNC_009368 
Strand
Start bp82923 
End bp84926 
Gene Length2004 bp 
Protein Length668 aa 
Translation table 
GC content61% 
IMG OID640420808 
Productpredicted protein 
Protein accessionXP_001421383 
Protein GI145354208 
COG category[K] Transcription 
COG ID[COG0557] Exoribonuclease R 
TIGRFAM ID[TIGR00358] VacB and RNase II family 3'-5' exoribonucleases 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.99968e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0425653 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GGAGCGGGGA CGTCGTACGA CGCGCACCGG AGCGAGGGAG AAATCGCCGA GGGCGCGGCG 
GCGGGGACGA TCGTCCTCGG CGCGCTTCGA GTGCAACGGT TAGGCGCGGT GTGCGAAGGG
TTCGTCGATG GGGTGCTCAT ACCGTCGAAA CACGCGATGA ATCGAGCGAT TCATGGGGAC
TCGGTGGCGG TGGAGATTTG TCCCGAGGAC GAGTGGCGCG CGGCGACGGC GACGTCGGTG
ACGCTCGAAG ACGGCGACCA GACGACGACG ACGTCAAAGG TTCGCACGGG ACGAGTCGTG
GGCATCACGC ATCGCGCCAC GCTGGACGTC GTGGCGTGTT TGGATGTCGT GGATGAGGAA
GACTTGAAGA GCGACGCGCG CGGCGAACGA AACGGCGCGC TCTGCGTGCC GATGGATTCA
AAAATCGTCA AAGTGAAACT CTTGACACGC CGCGCGCGGG ACTTGGTCGG TCAGCGCTTC
ATCGTGCGCA TCGATCGCTG GCTGGCGAAT CAGCGCTACC CGAGCGGACA CTTGGTGAAA
ATTCTCGGTG GCGTGGGAGA GGTCGACGGC GAGATGGCGG CGCTGTTGGC GCGTTACGAC
ATTCCCGCGG AGCCGTTTGG CGCGCGTGCG CTCGCGGAGC TCCCGCGCGA AGGCGCCGAT
TGGATGGTGC CCAAAGAAGA AATCGAGAAA AGGAGAGACT TGCGCCATCA CAGAGCGTGT
TCAATAGATC CCCCGGGATG TACCGACGTC GACGACGCGC TGAGCGTGCA CGTCTCAGCC
GATCGCGTCG AAATCGGCGT TCACATCGCG GACGTGTCGT ACTTCGTGCG CCCCGGAACG
TTGCTCGATC ACGAGGCACA AATGCGTGGA ACGACGGTGT ATTTGGTCGA TCGCCGTTTG
GACATGCTTC CGAGCTTATT GAGCGAAAAT TTGGCGTCGC TGTTGGAACG ACGCGATCGC
CTCGCGGTGA GTTGCGTTTG GACGCTCGAT AGGAATCTCG ACGTCGTCGA CGTTTGGCTC
GGTCGCACGG TGATCCATTC GAGACATCAA ATGACGTATT ACCAAGCCCA AGCGATTCAC
GACGGACAAC CGCTGCCGCA CGGTGACTCG AGCGATACGT TTGACGCCGT AGAGCGCGAA
CTCGTTCGCG GGGATTTGCA AACGCTCGTG GCGTTTGCGA ACAAGACGAA CGCCATTCGG
CTCGCGCACG GCGCTGTAGA GCTCGAGAGC GCCGAGTTGA GATTTGAAAC CGACGCACAA
ACGAAGACAC CGACGGAGGT TTTACAAAAA GATGAAGTGC CGATGATGCG CGTCGTCGCC
GAGTTGATGA TTTTGGCGAA TAGCGCGGCG GCGCGAACGA CGCACCGCGC ATTTCCATCC
CGCGCGCTTC TTCGGCGCCA CGCGCCACCT CGCGAAGGTG GTTTTGAAGA GCTCACAAAA
CTTGCTGCGG CGAAAGGCAT CGAGCTCGAC GGTTCGAGCG GTGAGGCGTT GAACGCGTCG
TTGGCGCGCG TCGCCGCGAC GTCCGAGCCA GAGGTGACGA CCCTGTTCAG AGGATTGGCC
ACGCGCGCGA TGTCAGAGGC GCAATACATC AGTTCTGGGT CCATTTCCGG TGCCGATGGT
GGGTTCGGGC ATTACGGTCT CGCGTTGACG TATTACACGC ATTTCACGTC TCCTATTCGT
CGATATGCGG ATGTTGTCGT GCATCGTCAG CTCATCGCCG CCGTGGATGT CGCCGAGGCG
GAGAAGAGAG CGACGGAGCG TGATCTGGAC TCTCTGGCGC AACACTTGAA CGAGCGCAAT
CGTGCGTCAA AACACGCGCA ATCACGGTGT GGAGAAATCT ATCTTTTGTG GCTTTTGCGC
GAAAAGCCGA TGATTGAGCC CGCCGTGGTG CACGAGATTC GCGACGACGG CGTCATGGTG
TTCCTGCCGG CGTTTCACAT GAAGGCCCCG ATCAGGCTCG TCGATGACGC GGGGAACGCC
ATCGAAGAAC TCAAAGAAAG CACG
 
Protein sequence
GAGTSYDAHR SEGEIAEGAA AGTIVLGALR VQRLGAVCEG FVDGVLIPSK HAMNRAIHGD 
SVAVEICPED EWRAATATSV TLEDGDQTTT TSKVRTGRVV GITHRATLDV VACLDVVDEE
DLKSDARGER NGALCVPMDS KIVKVKLLTR RARDLVGQRF IVRIDRWLAN QRYPSGHLVK
ILGGVGEVDG EMAALLARYD IPAEPFGARA LAELPREGAD WMVPKEEIEK RRDLRHHRAC
SIDPPGCTDV DDALSVHVSA DRVEIGVHIA DVSYFVRPGT LLDHEAQMRG TTVYLVDRRL
DMLPSLLSEN LASLLERRDR LAVSCVWTLD RNLDVVDVWL GRTVIHSRHQ MTYYQAQAIH
DGQPLPHGDS SDTFDAVERE LVRGDLQTLV AFANKTNAIR LAHGAVELES AELRFETDAQ
TKTPTEVLQK DEVPMMRVVA ELMILANSAA ARTTHRAFPS RALLRRHAPP REGGFEELTK
LAAAKGIELD GSSGEALNAS LARVAATSEP EVTTLFRGLA TRAMSEAQYI SSGSISGADG
GFGHYGLALT YYTHFTSPIR RYADVVVHRQ LIAAVDVAEA EKRATERDLD SLAQHLNERN
RASKHAQSRC GEIYLLWLLR EKPMIEPAVV HEIRDDGVMV FLPAFHMKAP IRLVDDAGNA
IEELKEST