| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_10027 |
|---|
| Symbol | |
|---|
| ID | 5005387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009368 |
|---|
| Strand | - |
|---|
| Start bp | 82923 |
|---|
| End bp | 84926 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | |
|---|
| GC content | 61% |
|---|
| IMG OID | 640420808 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001421383 |
|---|
| Protein GI | 145354208 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000299968 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0425653 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GGAGCGGGGA CGTCGTACGA CGCGCACCGG AGCGAGGGAG AAATCGCCGA GGGCGCGGCG
GCGGGGACGA TCGTCCTCGG CGCGCTTCGA GTGCAACGGT TAGGCGCGGT GTGCGAAGGG
TTCGTCGATG GGGTGCTCAT ACCGTCGAAA CACGCGATGA ATCGAGCGAT TCATGGGGAC
TCGGTGGCGG TGGAGATTTG TCCCGAGGAC GAGTGGCGCG CGGCGACGGC GACGTCGGTG
ACGCTCGAAG ACGGCGACCA GACGACGACG ACGTCAAAGG TTCGCACGGG ACGAGTCGTG
GGCATCACGC ATCGCGCCAC GCTGGACGTC GTGGCGTGTT TGGATGTCGT GGATGAGGAA
GACTTGAAGA GCGACGCGCG CGGCGAACGA AACGGCGCGC TCTGCGTGCC GATGGATTCA
AAAATCGTCA AAGTGAAACT CTTGACACGC CGCGCGCGGG ACTTGGTCGG TCAGCGCTTC
ATCGTGCGCA TCGATCGCTG GCTGGCGAAT CAGCGCTACC CGAGCGGACA CTTGGTGAAA
ATTCTCGGTG GCGTGGGAGA GGTCGACGGC GAGATGGCGG CGCTGTTGGC GCGTTACGAC
ATTCCCGCGG AGCCGTTTGG CGCGCGTGCG CTCGCGGAGC TCCCGCGCGA AGGCGCCGAT
TGGATGGTGC CCAAAGAAGA AATCGAGAAA AGGAGAGACT TGCGCCATCA CAGAGCGTGT
TCAATAGATC CCCCGGGATG TACCGACGTC GACGACGCGC TGAGCGTGCA CGTCTCAGCC
GATCGCGTCG AAATCGGCGT TCACATCGCG GACGTGTCGT ACTTCGTGCG CCCCGGAACG
TTGCTCGATC ACGAGGCACA AATGCGTGGA ACGACGGTGT ATTTGGTCGA TCGCCGTTTG
GACATGCTTC CGAGCTTATT GAGCGAAAAT TTGGCGTCGC TGTTGGAACG ACGCGATCGC
CTCGCGGTGA GTTGCGTTTG GACGCTCGAT AGGAATCTCG ACGTCGTCGA CGTTTGGCTC
GGTCGCACGG TGATCCATTC GAGACATCAA ATGACGTATT ACCAAGCCCA AGCGATTCAC
GACGGACAAC CGCTGCCGCA CGGTGACTCG AGCGATACGT TTGACGCCGT AGAGCGCGAA
CTCGTTCGCG GGGATTTGCA AACGCTCGTG GCGTTTGCGA ACAAGACGAA CGCCATTCGG
CTCGCGCACG GCGCTGTAGA GCTCGAGAGC GCCGAGTTGA GATTTGAAAC CGACGCACAA
ACGAAGACAC CGACGGAGGT TTTACAAAAA GATGAAGTGC CGATGATGCG CGTCGTCGCC
GAGTTGATGA TTTTGGCGAA TAGCGCGGCG GCGCGAACGA CGCACCGCGC ATTTCCATCC
CGCGCGCTTC TTCGGCGCCA CGCGCCACCT CGCGAAGGTG GTTTTGAAGA GCTCACAAAA
CTTGCTGCGG CGAAAGGCAT CGAGCTCGAC GGTTCGAGCG GTGAGGCGTT GAACGCGTCG
TTGGCGCGCG TCGCCGCGAC GTCCGAGCCA GAGGTGACGA CCCTGTTCAG AGGATTGGCC
ACGCGCGCGA TGTCAGAGGC GCAATACATC AGTTCTGGGT CCATTTCCGG TGCCGATGGT
GGGTTCGGGC ATTACGGTCT CGCGTTGACG TATTACACGC ATTTCACGTC TCCTATTCGT
CGATATGCGG ATGTTGTCGT GCATCGTCAG CTCATCGCCG CCGTGGATGT CGCCGAGGCG
GAGAAGAGAG CGACGGAGCG TGATCTGGAC TCTCTGGCGC AACACTTGAA CGAGCGCAAT
CGTGCGTCAA AACACGCGCA ATCACGGTGT GGAGAAATCT ATCTTTTGTG GCTTTTGCGC
GAAAAGCCGA TGATTGAGCC CGCCGTGGTG CACGAGATTC GCGACGACGG CGTCATGGTG
TTCCTGCCGG CGTTTCACAT GAAGGCCCCG ATCAGGCTCG TCGATGACGC GGGGAACGCC
ATCGAAGAAC TCAAAGAAAG CACG
|
|---|
| Protein sequence | GAGTSYDAHR SEGEIAEGAA AGTIVLGALR VQRLGAVCEG FVDGVLIPSK HAMNRAIHGD
SVAVEICPED EWRAATATSV TLEDGDQTTT TSKVRTGRVV GITHRATLDV VACLDVVDEE
DLKSDARGER NGALCVPMDS KIVKVKLLTR RARDLVGQRF IVRIDRWLAN QRYPSGHLVK
ILGGVGEVDG EMAALLARYD IPAEPFGARA LAELPREGAD WMVPKEEIEK RRDLRHHRAC
SIDPPGCTDV DDALSVHVSA DRVEIGVHIA DVSYFVRPGT LLDHEAQMRG TTVYLVDRRL
DMLPSLLSEN LASLLERRDR LAVSCVWTLD RNLDVVDVWL GRTVIHSRHQ MTYYQAQAIH
DGQPLPHGDS SDTFDAVERE LVRGDLQTLV AFANKTNAIR LAHGAVELES AELRFETDAQ
TKTPTEVLQK DEVPMMRVVA ELMILANSAA ARTTHRAFPS RALLRRHAPP REGGFEELTK
LAAAKGIELD GSSGEALNAS LARVAATSEP EVTTLFRGLA TRAMSEAQYI SSGSISGADG
GFGHYGLALT YYTHFTSPIR RYADVVVHRQ LIAAVDVAEA EKRATERDLD SLAQHLNERN
RASKHAQSRC GEIYLLWLLR EKPMIEPAVV HEIRDDGVMV FLPAFHMKAP IRLVDDAGNA
IEELKEST
|
|---|
| |