| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_43971 |
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| Symbol | |
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| ID | 5004500 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Ostreococcus lucimarinus CCE9901 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009365 |
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| Strand | + |
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| Start bp | 570214 |
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| End bp | 573162 |
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| Gene Length | 2949 bp |
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| Protein Length | 962 aa |
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| Translation table | |
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| GC content | 60% |
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| IMG OID | 640419921 |
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| Product | predicted protein |
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| Protein accession | XP_001420386 |
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| Protein GI | 145352079 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCGCG TCGGGAAGAC GTTCGTCAAG ACGACGAAGC GCGGGCAGGC GGTGACCAAG
GTGCGACGGG AGCGGTACCT GCGCGACGAC GTGTACGTCG GATGCGGGGA CGCCGCCGTC
GAGGCGCGGT ATCGAGGACG CGACGAGGCG CTGTACGTGC TTCGACCGGA GCGCCGAGGC
GCGAAAAGCG AGCGAACGAT CGCGCTGATC GATTCGAACG TCGCGCTGCA TCAGATGGAC
GCGCTGGCGG ACGCGAGGGT GACGGATGTG GTGATTTGCG CGACGGTGAT GGAGGAGACG
CGAAACAAGT CGCGGACGTC GTACGAGCGG TTACGAGGAT TGTGTAAGGA TAAAGAGAAG
CGGTTTTACG TGTTTAGTAA TGAGAATCAC GCGGAGACGT ACGCGGAAGA CGTCGCGGGG
GAGTCGGCGA ACGATCGGAA CGATCGAGCG ATACGCAAGG CGGCGGCGTT TTATCGCCGA
GCGATTCCGC GCGCGGCGTG CGAACGCGTG ACGCTCGTGA CGAATGATCG AGGAAACGCG
AGAAAGGCGC GAGAGGAGAA TATAGACGTG ATGAGCGTGA TTGAATGGAT ACAGTCGATC
TCAAACGACG CGAGCTTGGT GGATTTGGTC GTCCCGGGCG GAGGGGCGGA GATTCCCGAG
GACGAACGCG ACGCCAAGCG AGCGAAGAGC GGCGGCGGCG CGAGCGCGAG CGTTTTCGAG
GCGTATCTCG ACGCGAATGA CATCAAGGAA GGTTTAGCGA GTGGAAAATT GATCAAAGGC
GGCGTTCGAA CGTCTAGATA TAACCCTTTT GAGGCGCACG TGATGAATGA AGGTACCGGA
GAAGGCGTAC TGCTGAGCGG ACGCGCGGCG ATGAATCGCG CCATCGACGG CGACTTGGTC
GCCGTGGAAA TCTTGCCCGA ATCCCAATGG ATTCGTCCGG GTGGTATGAT CATCACCGGT
ACCGCAGAAG AAGACAAAGA GACGTCCTCC GCGGACGTCG ACGCGAAGGA CGACGCCGGC
GGACTGGCGC CGGAGACTGC GGATGAAACG GACGTCGCTG TCGCGGCGAC GAAGGCGTCG
GGCGTCGTTC CCACGGGAAA AGTTGTAGGT ATCATTCGGC GCAACTGGCG CGAACGCGGT
TATGCGGCGT CGGTCGACAT GGGAAGAGAC GGCAAAGGTC CAACCGCAGC CGGTGGCGGC
TTCGCATCGC GCGTCTTGTG CGTGCCGAGC GATAGACGAT TTCCAAAGAT TCGCATCCAG
ACGCGCCAAC TCGAAGGCTT GCTTGACCAG CGCATCGTCG TCGTCATCGA CGATTGGCCC
GCGGATAGCA TGTACCCCGA AGGGCACTAC GTCAAGTCGC TCGGATTGAT CGGTAGCGTC
GATGCCGAAA CACAGGCACT TCTGCTCGAA AACGACGTTG ACGATCGACC GTTCGCGCCG
GCGGTGTACG CGTGCGTGCC CGCCTTGCCG TGGAAAGTCA CCGACGACCA TCTCGCCGAA
CCCGGTCGCG AGGACTTGCG CGATTTATTG GTGTGCAGCG TCGATCCTCC GGGGTGTAAA
GACATCGACG ATGCGCTGAG CGCGCGCGAT ATCGACGACG AGCGCATTGA AATCGGCGTG
CACATCGCTG ACGTGACGTC GTTTCTGTTC CCAGACACCG CCATGGACGA AGAGGCGGCG
CGTCGAGGGA CGACGACGTA CTTGGTGCAA CGCCGTTTGG ACATGCTTCC GGGAGCGCTG
ACGACGGACA TATGCTCTTT GGTTGGAGGT CAAGAGCGCT TGGCGTTTTC GGCGTTTTGG
ATCGTGCAAA AGTCCACGAT GCTTCCGGAT GAAACCGTCA AACCACGATT TACGAAGAGC
GTCATCAAGA GCGCGGCGGC GTTGACGTAC GAGCAAGCGC AGACGCGAAT CGACGATGCA
TCTTTGAACG ATGATTTGAC GCTCAGCTTG AGGCGACTTC GTGATGTCGC AAGACAGCTA
CGCAAGCGGC GCATGGCGAA CGGCGCGCTG ACATTGGCTT CGCCCGAGGT GCGATTCGAG
ATGGATCAGC AGTCGAGCGA TCCGCTCGAC GTGGGCATGT ACGTCACGCG CGAGACGAAT
CAAATGGTTG AAGAAATGAT GTTGTTAGCC AACGTCAGCA CCGCGGAGCG TATTTTGCAA
GCATATCCCG CGGCGGCGAT GTTACGCCGT CACCCGATTC CCGAGCAGAA AATGTTTGAG
CCCTTACTCA AGGCGGCCAA GGCGTGCGGC GTGGACATTG ACACGCAATC CAACCGCACG
CTCGCGGCGA GTCTAGACGC CGCCGTGCGA CCGGAAGACG CGTATTTCAA CACGCTATTG
CGCTTACAAG CGACGCGGTG CATGTCACAG GCGGTGTACT GCAGCTCGGG CCAATACGCT
GGACCAGAGC GCATGCACTA CGGTCTCGCC ATGCCGTTGT ACACGCACTT TACGTCGCCG
ATTCGTCGGT ACGCCGACGT AATCGTACAC AGATTACTGA GTGCGGCGAT CGGGCTGTGT
CCTCGTCACA AGTCGTTGGA GGACTCCGAT CACGTCAAAT CCGTCGCAGA CGTCTGCAAC
GTGCGTCATC GCAATTCTCA GCAAGCCGGT CGCGCGTCCG TAGAGTTACA CACCTTGGTG
TTTTTCCGCA AGCGCAAAAT TGTCGCCGAC GCGCGCGTCT TCAAAGTGCG CGCAAACGGA
CTCGTGGTTT TTGTCCCAAA GTTTGGCATC GAAGGACCTG TGCTCTTCGT CGAGGGCGAA
AATAGCGACA CCGCGACTTG TACGCTCGAC GAAGACGCTA TGACGGTGAC GCACAAAGGA
AAGACGTGGA AAGTTTTCGA CCGGCTCACC GTGCGAGTGG AGGTCGAACA ACTCCCTGCG
CATCGGAGTC GTTTGCTCAT CACCATCGTT CCTGACGACA CTCCGCGCGG GGAGATCGCG
AGCGCGTGA
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| Protein sequence | MHRVGKTFVK TTKRGQAVTK VRRERYLRDD VYVGCGDAAV EARERTIALI DSNVALHQMD
ALADARVTDV VICATVMEET RNKSRTSYER LRGLCKDKEK RFYVFSNENH AETYAEDVAG
ESANDRNDRA IRKAAAFYRR AIPRAACERV TLVTNDRGNA RKAREENIDV MSVIEWIQSI
SNDASLVDLV VPGGGAEIPE DERDAKRAKS GGGASASVFE AYLDANDIKE GLASGKLIKG
GVRTSRYNPF EAHVMNEGTG EGVLLSGRAA MNRAIDGDLV AVEILPESQW IRPGGMIITG
TAEEDKETSS ADVDAKDDAG GLAPETADET DVAVAATKAS GVVPTGKVVG IIRRNWRERG
YAASVDMGRD GKGPTAAGGG FASRVLCVPS DRRFPKIRIQ TRQLEGLLDQ RIVVVIDDWP
ADSMYPEGHY VKSLGLIGSV DAETQALLLE NDVDDRPFAP AVYACVPALP WKVTDDHLAE
PGREDLRDLL VCSVDPPGCK DIDDALSARD IDDERIEIGV HIADVTSFLF PDTAMDEEAA
RRGTTTYLVQ RRLDMLPGAL TTDICSLVGG QERLAFSAFW IVQKSTMLPD ETVKPRFTKS
VIKSAAALTY EQAQTRIDDA SLNDDLTLSL RRLRDVARQL RKRRMANGAL TLASPEVRFE
MDQQSSDPLD VGMYVTRETN QMVEEMMLLA NVSTAERILQ AYPAAAMLRR HPIPEQKMFE
PLLKAAKACG VDIDTQSNRT LAASLDAAVR PEDAYFNTLL RLQATRCMSQ AVYCSSGQYA
GPERMHYGLA MPLYTHFTSP IRRYADVIVH RLLSAAIGLC PRHKSLEDSD HVKSVADVCN
VRHRNSQQAG RASVELHTLV FFRKRKIVAD ARVFKVRANG LVVFVPKFGI EGPVLFVEGE
NSDTATCTLD EDAMTVTHKG KTWKVFDRLT VRVEVEQLPA HRSRLLITIV PDDTPRGEIA
SA
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