| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_35099 |
|---|
| Symbol | |
|---|
| ID | 5003803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009363 |
|---|
| Strand | + |
|---|
| Start bp | 414541 |
|---|
| End bp | 416496 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | |
|---|
| GC content | 61% |
|---|
| IMG OID | 640419224 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001419590 |
|---|
| Protein GI | 145350390 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.235498 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000591243 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACG GCGCGTTCGC CGGGGCGGCG CGCGCGGACG CGTTCAACGC GGCGCCGACG
GAACAAGTGC AACAACAGCG CGGTGAGGCG GTGTCCGCGT TCGCGGATGC GTCCAAGGAA
GCACCGGCGG TGAACGCCGA TGGGTTGCCG GAAGGGAACA ACTGGCGTTA CAGCGAATTC
ATCAAGGCGG TGATGAGCGG CAAGGTTGAG CGCGTGCGCT TCTCCAAGGA TGGCTCCGCG
TTGCAGTTGA CCGCGGTCAA CGGTGCGCGC GCGACCGTCA TCTTGCCCAA CGATCCGGAA
CTCGTCGACA TCCTGGCCAA GAATGGTGTC GACATCTCCG TCAGCGAAGG CGAGCAACAG
GGCAACGCCG CCTCTTTGGT CGGCAACTTG TTGTTCCCGC TCGTGGCGTT CGGAGGTTTG
TTCTTCTTGT TCCGCCGCGC GCAAGGTGGC GATGGCGGCA TGGGTGGCAT GGGTGGTATG
GGCGGTGGAC CCATGGACTT CGGTAAGTCC AAGTCCAAGT TCCAAGAAGT TCCGGAAACC
GGTGTGACGT TCGCGGACGT CGCCGGCGTC GAAGGCGCCA AGTTGGAATT GCAAGAAGTC
GTCGACTTTT TGAAGAACCC AGACAAGTAC ACCGCGCTCG GTGCCAAGAT CCCGAAGGGT
TGCCTTTTGG TCGGTCCGCC GGGTACCGGT AAGACCCTGA TCGCCAAGGC GGTCGCCGGT
GAAGCCGGTG TGCCGTTCTT CTCTTGCGCC GCGTCCGAGT TCGTCGAACT CTTCGTCGGC
GTTGGCGCGT CTCGCGTTCG CGACTTGTTC GAAAAGGCCA AGGCCAAGGC TCCGTGCATC
ATCTTCATCG ATGAAATCGA CGCCGTCGGT CGCCAACGTG GCTCCGGTAT GGGTGGTGGC
AACGACGAGC GCGAACAGAC CATCAACCAG CTTCTCACCG AGATGGATGG TTTCGAAGGC
AACACGGGCG TCATCGTCCT TGCGGCGACG AACAGACCGG ACGTGCTCGA TAGCGCGCTC
CTTCGCCCGG GACGTTTCGA TCGTCAAGTT ACCGTCGATC GTCCGGACGT CGCTGGTCGC
ATCCGCATCC TCAAGGTGCA CGCCCGTGGC AAGACTTTGG CCAAGGACGT CGACTTCGAC
AAGATCGCTC GCCGTACGCC GGGTTTCACG GGTGCCGATT TGGAAAACCT CATGAACGAG
TCCGCGATTC TCGCCGCGCG CCGTGAACTC ACGGAAATCT CCAAGGAAGA AATCGCCGAT
GCTCTCGAGC GCATCATCGC CGGTGCCGCC AGAGAAGGTG CCGTCATGTC TGAGAAGAAG
AAGAAGCTCG TGGCGTACCA CGAAGCTGGC CACGCGCTCG TCGGGGCCCT CATGCCGGAT
TACGACGCCG TGACGAAGAT TTCCATCGTC CCGCGCGGTA ACGCCGGTGG TTTGACTTTC
TTCGCCCCGA GCGAAGAGCG TCTCGAATCT GGCTTGTACT CTCGCACGTA CCTTGAGAAC
CAAATGGCTG TCGCCATGGG TGGTCGCGTC GCCGAAGAAC TCATCTTCGG CGCTGAAGAC
GTCACCACGG GCGCGTCCGG TGATTTCCAG CAAGTCACCC GCACCGCGCG TATGATGATC
GAGCAAATGG GTTTCTCCAA GCGAATTGGT CAAATCGCCA TCAAGTCTGG CGGCGGTAAC
TCTTTCCTTG GCAACGACAT GGGTCGCGCC GCTGATTACT CCGCCGCCAC CGCCGCCATC
GTCGATGAAG AAGTCAAGAT CTTGGTCACT GCGGCCTACC GCCGCGCCAA GGACTTGGTT
CAATTGAACA TGGACGTCTT GCACGCCGTC GCGGACGTGT TGATGGAGAA GGAGAACATC
GACGGCGACG AATTCGAGCG CATCATGCTC GGCGCCAAGT CGGAGCTCTA CCTCAAGGCG
GACGAGCCTT CGGTCGCAGT GCCGTACCAA AACTGA
|
|---|
| Protein sequence | MTNGAFAGAA RADAFNAAPT EQVQQQRGEA VSAFADASKE APAVNADGLP EGNNWRYSEF
IKAVMSGKVE RVRFSKDGSA LQLTAVNGAR ATVILPNDPE LVDILAKNGV DISVSEGEQQ
GNAASLVGNL LFPLVAFGGL FFLFRRAQGG DGGMGGMGGM GGGPMDFGKS KSKFQEVPET
GVTFADVAGV EGAKLELQEV VDFLKNPDKY TALGAKIPKG CLLVGPPGTG KTLIAKAVAG
EAGVPFFSCA ASEFVELFVG VGASRVRDLF EKAKAKAPCI IFIDEIDAVG RQRGSGMGGG
NDEREQTINQ LLTEMDGFEG NTGVIVLAAT NRPDVLDSAL LRPGRFDRQV TVDRPDVAGR
IRILKVHARG KTLAKDVDFD KIARRTPGFT GADLENLMNE SAILAARREL TEISKEEIAD
ALERIIAGAA REGAVMSEKK KKLVAYHEAG HALVGALMPD YDAVTKISIV PRGNAGGLTF
FAPSEERLES GLYSRTYLEN QMAVAMGGRV AEELIFGAED VTTGASGDFQ QVTRTARMMI
EQMGFSKRIG QIAIKSGGGN SFLGNDMGRA ADYSAATAAI VDEEVKILVT AAYRRAKDLV
QLNMDVLHAV ADVLMEKENI DGDEFERIML GAKSELYLKA DEPSVAVPYQ N
|
|---|
| |