| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mflv_1232 |
|---|
| Symbol | |
|---|
| ID | 4972558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium gilvum PYR-GCK |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009338 |
|---|
| Strand | - |
|---|
| Start bp | 1286564 |
|---|
| End bp | 1288075 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640455432 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001132502 |
|---|
| Protein GI | 145221824 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component
[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0615942 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAGAA CCCTTGGGCG GACACGCCGA GCTTGCTACG GTCCGCCGAT GGGCAACCCA
CGCAGAGTCC TGCTCGCGGT GCTCGCCGCC CTCGCCGTGC TGCTGACGGC GTGCGGATCA
TCGGGACCCG GAAACTCGGT GAAGGACAGC GGCGTGCTGC GCGTGGGCAC CGAGGGCGTG
TACGCGCCGT TCAGCTTTCA CGACCCCGCG ACCGGCCAGC TCACCGGCTA CGACGTCGAC
GTCGCCCGCG CCGTCGGCGA GAAGCTCGGC GTCAACGTCG AATTCGTCGA GACACCCTGG
GACTCGATCT TCGCCGCACT GGAGGCCAAC CGCTTCGACG TCGTCGCCAA CCAGGTGACC
ATCACCCCGG AACGCCAGCA GAAGTACGAC CTGTCCGAGC CCTATTCGAT CGGCGAGGGT
GTGATCGTCA CCCGCGCCGA CGACGACTCG ATCACCTCAC TCGACGACCT GAGGGGCAGG
CGCGCCGCCC AGAGCACCAC CAGCAACTGG GCCCAGGTCG CCCGCGACGC CGGCGCCCAG
ATCGAATCGG TGGAGGGGCT CACCCAGGCC ATGGCGCTGC TGAGCCAGGG CCGGGTGGAC
GTCGTCGTCA ACGACAGCCT GTCGATCTAC GCCTACCTCG CCGAGACCGG CGACACCGCC
GTCAAGATCG CGGGCACCAC GGGTGAGAAG AGCGAACAGG GTTTCGCGGC GCGCAAGAAC
TCCGGGCTGC TGCCCGACCT GAACACCGCC GTCGAAGAGC TCAAGGCCGA CGGCACGATG
GCCGAGATCT CGCAGAAGTA CCTGAAGACC AACGCGTCCG GCGGCCAGGA CACCCCGCAG
GCCCAACCCC GCTCGACCCT GCAGCTGGTT CTCGACAACC TCTGGCCGCT GGCGAAAGCC
GCGCTGACGA TGACGATCCC GCTGACCATC ATCAGCTTCG TCATCGGCCT GGTGATCGCG
CTCGGGGTCG CGCTGGCACG GCTGTCGTCC AATGTGGTGC TGAGCAACCT GGCGCGGTTC
TACATCTCGG TCATCCGCGG CACCCCGCTG CTGGTGCAGC TGTTCATCGT GTTCTTCGCA
CTGCCCGAGT TCGGTGTGAA GATCGATCCG TTCCCCGCCG CGGTGATCGC GTTCAGCCTC
AACGTCGGCG GGTACGCCGC CGAGATCATC CGCTCGGCGA TCCAGAGCAT CCCGAAGGGT
CAGTGGGAGG CCGCCGAGAC GATCGGGCTG AACTACGTCG GCACGCTGCG GCGGATCATC
CTGCCGCAGG CCACCCGGGT CGCGGTGCCG CCACTGTCGA ACACGTTGAT CTCGCTGGTC
AAAGACACCT CGCTGGCGTC GACGATCCTG GTCACCGAAC TGCTGCGGCA GGCCCAGATC
ATCGCGGCGC CGACGTTCGA GTTCTTCGCG CTGTACGGCA CCGCCGCCGT CTACTACTGG
GTGATCTGTC TGGTGCTCTC GTTCGGGCAG GCCCGCTTCG AACACCGACT GGAAAGGTAC
GTGGCGAGAT GA
|
|---|
| Protein sequence | MSRTLGRTRR ACYGPPMGNP RRVLLAVLAA LAVLLTACGS SGPGNSVKDS GVLRVGTEGV
YAPFSFHDPA TGQLTGYDVD VARAVGEKLG VNVEFVETPW DSIFAALEAN RFDVVANQVT
ITPERQQKYD LSEPYSIGEG VIVTRADDDS ITSLDDLRGR RAAQSTTSNW AQVARDAGAQ
IESVEGLTQA MALLSQGRVD VVVNDSLSIY AYLAETGDTA VKIAGTTGEK SEQGFAARKN
SGLLPDLNTA VEELKADGTM AEISQKYLKT NASGGQDTPQ AQPRSTLQLV LDNLWPLAKA
ALTMTIPLTI ISFVIGLVIA LGVALARLSS NVVLSNLARF YISVIRGTPL LVQLFIVFFA
LPEFGVKIDP FPAAVIAFSL NVGGYAAEII RSAIQSIPKG QWEAAETIGL NYVGTLRRII
LPQATRVAVP PLSNTLISLV KDTSLASTIL VTELLRQAQI IAAPTFEFFA LYGTAAVYYW
VICLVLSFGQ ARFEHRLERY VAR
|
|---|
| |