Gene Dred_3175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_3175 
Symbol 
ID4957224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand- 
Start bp3455369 
End bp3456019 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content46% 
IMG OID640182363 
Productputative transaldolase 
Protein accessionYP_001114502 
Protein GI134301006 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00875] fructose-6-phosphate aldolase, TalC/MipB family 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.000196987 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTCTTT TTATCGATAC TGCAAATGTA GATGAAATTC GGGCTGCCAA TGCCCTGGGT 
GTCATTGCTG GCGTAACCAC CAATCCCTCT CTGATTGCCC GAGAAGGACG TGATTTTGCG 
GAAGTTGTAA AAGAAATAAC CTCCATTGTT GACGGTCCCA TCAGTGCAGA AGTGATTAGC 
TTGGATGCCG AAGGTATGAT GAAAGAAGCT GTGGAACTTG CAGCCATTCA CCCCAATATT 
GTTATCAAAA TACCAATGAC CACCGAGGGA TTAAAAGCAA CCCGGGCCTG TATGGAAAAG 
GGCATTAAAA CCAATGTTAC CCTAATCTTT TCTGCTAATC AGGCGCTATT GGCTGCCAGG 
GCAGGTGCTA CCTATGTTAG TCCCTTTGTG GGACGCTTAG ATGATATTGG CCAGGATGGG 
ATTGGCTTGA TCTACGATAT AGCAGATATC TTTAACAATT ATGATCTTGC TACCCAAATT 
ATCTCAGCCA GTATTCGTCA CCCGTTACAC GTTCAGCAAT CCGCCAAGGC CGGGGCCCAC 
ATAGCCACAG TACCTTATAA AGTATTGCTG CAAATGGCCA AACATCCCTT AACAGATAAG 
GGAATTGATG CCTTCCTTGC CGACTGGGCA AAGCTTACCC CAAAAGCCTA A
 
Protein sequence
MLLFIDTANV DEIRAANALG VIAGVTTNPS LIAREGRDFA EVVKEITSIV DGPISAEVIS 
LDAEGMMKEA VELAAIHPNI VIKIPMTTEG LKATRACMEK GIKTNVTLIF SANQALLAAR 
AGATYVSPFV GRLDDIGQDG IGLIYDIADI FNNYDLATQI ISASIRHPLH VQQSAKAGAH 
IATVPYKVLL QMAKHPLTDK GIDAFLADWA KLTPKA