Gene Dred_3090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_3090 
Symbol 
ID4956903 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp3354459 
End bp3356303 
Gene Length1845 bp 
Protein Length614 aa 
Translation table11 
GC content46% 
IMG OID640182278 
Productputative Chase2 sensor protein 
Protein accessionYP_001114417 
Protein GI134300921 
COG category[T] Signal transduction mechanisms 
COG ID[COG4252] Predicted transmembrane sensor domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTTTT CTCAAAGATT ATTACAGCTT GGTCTTAAGC ATAAGTTGTT AATTCCGATC 
ATCTTACTTA TTGTCATAGA ATTAGCTATA ACTATGGGTA TCTTCTCCCG TCCGGAAATG
GATATTTATG ATGCCTGGTT TCGTTTTAAA GGGCGGCAAA ACCCTGGCAA TCAAATTGTC
ATTGTGGCCA TTGATGAGTC CTCCATTAAT AGAATTGGCC CCCTGGCCTG GCCCAGGTCG
GTGCACGCTG AGCTTCTGGA AAGGTTAAGG GAGGCCAAGG TGGTTGGTTT TGATATGGTG
TTTGACTCAC TCAGTAATCC TGCTGAAGAC CAAGCCTTTG CCGAAGCAAT TAAGAAACAT
GGCAGAGTGG TGCTGGCCAG TACCTTCTCT TTTATGAAAG ATGATACCGA CCAAGTAGAG
CAAAGGCTGT TAACACCTCA GCAAAATTTC TTGTCAGCCG GTTTAGCCGG CTTAGGGTTT
GCCAATACTC CCACCGATCC AGATCAGGTG GTAAGAAGAA TCACTCTGGT TGACATAAAC
ACCTTCGATA TCCCCTTTCC TTCCTTTGGT CTGGCTGTGG CCCTGGTTGC CGAAGGCATT
GACCCCCGAA ATATAACACT TTCTAAGGAT CATCTTCTGG TTGGTAAAAA AATGATACCC
ATTGACAGTG CTAACCGAGC CCTAGCAAAT TTCTGGGGTC CCCGGGAAAC CTTTAAAACC
ATTGGTTATG CCGATGTATT AGAGGGAAGA GTTCCCACCA GCTTTTTTAA AGATAAGATC
GTTCTTATTG GAGATACCAC CGCCATGGGC CACGATGAGT TGTCAACACC TTATACCACA
ACCAACATGG TATTAAGCGG TGCCTTGCCA ACCCCGGGTG TAGAGATCCA TGCCTCCGCG
GTAAACAGTT TTATTTTGAA TGGTTGGTTC CGCCAAGTGC CCCCCTATGT TAATTTTATT
TTTCTTGTCT TGGCGGGCTT AACAACTTCT ATTATGGTTT CCGGTGGTGG ACCTTGGAAG
GGTTTAGTGG GCACCCTGTT TTTAGTTACC CTAAGTATGG GCATTGTCTT TGCCCTCTGG
CAATCCCATT GGTGGTTGAA TTTGGCCGCC CCGGTTACCC TTATTTTTTT GACCTATGCT
GTGACCACCG CTACGGAGTT TCTTCAAGCG GAAATGGCCC GTCGCAAAAC AAAGGCTATA
TTCAGTCGGT ATCTTTCTCC CGATGTGGTG AATGAGTTAA TACAAAACAA CGATAGCCTT
TCCCTGGGAG GTAAGCGCCA GGATCTTACC ATTATGTTCT GTGATATCCG AGGCTTTACA
GCCTACAGTG AAGGTAAGCC TCCGGAAGAG GTTGTAAACC GATTAAATGA ATACCTGACA
GCCATTACCC GAGTTGTTTT TAACCATGGA GGTATGCTGG ATAAGTACCT GGGTGATGGC
TTGATGGCAA TTTTTGGGGC ACCCATTTTT TATGAGGATC ATATTGAGAG GGCTATCCTG
GCTGCGGTGG AAATCCAAGA AGCCATTGAA ATGCTGAACC AGAAATGGGC CGAACAGGGT
GCCCCGCCGT TAAATGTGGG GGTTGGCATC AATTCCGGCA GTGTCCTAGT CGGTAATGTG
GGTAGTCCCG AACGCATGGA TTATACCGTC ATTGGTGAAG ATGTAAATCT AGCCTCCCGG
GTGGAAGGGT TGACGAAAAA TTTTGGTGCT TTGATTGTTA TCAGTGAGCG TTCGGTGCAG
CAACTGCCCG ATACCTGTGG ACTGAAATCA TCCTTGAGAT TTCTAGGCCA AGCTGAGGTG
AAAGGTTTTA GTCACCCTGT GGGGGTCTAT ACCATTGAAA AGTAG
 
Protein sequence
MNFSQRLLQL GLKHKLLIPI ILLIVIELAI TMGIFSRPEM DIYDAWFRFK GRQNPGNQIV 
IVAIDESSIN RIGPLAWPRS VHAELLERLR EAKVVGFDMV FDSLSNPAED QAFAEAIKKH
GRVVLASTFS FMKDDTDQVE QRLLTPQQNF LSAGLAGLGF ANTPTDPDQV VRRITLVDIN
TFDIPFPSFG LAVALVAEGI DPRNITLSKD HLLVGKKMIP IDSANRALAN FWGPRETFKT
IGYADVLEGR VPTSFFKDKI VLIGDTTAMG HDELSTPYTT TNMVLSGALP TPGVEIHASA
VNSFILNGWF RQVPPYVNFI FLVLAGLTTS IMVSGGGPWK GLVGTLFLVT LSMGIVFALW
QSHWWLNLAA PVTLIFLTYA VTTATEFLQA EMARRKTKAI FSRYLSPDVV NELIQNNDSL
SLGGKRQDLT IMFCDIRGFT AYSEGKPPEE VVNRLNEYLT AITRVVFNHG GMLDKYLGDG
LMAIFGAPIF YEDHIERAIL AAVEIQEAIE MLNQKWAEQG APPLNVGVGI NSGSVLVGNV
GSPERMDYTV IGEDVNLASR VEGLTKNFGA LIVISERSVQ QLPDTCGLKS SLRFLGQAEV
KGFSHPVGVY TIEK