Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dred_3050 |
Symbol | |
ID | 4956716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum reducens MI-1 |
Kingdom | Bacteria |
Replicon accession | NC_009253 |
Strand | - |
Start bp | 3310224 |
End bp | 3312065 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640182238 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_001114377 |
Protein GI | 134300881 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAACA AATTTAGAAT ACCTTTATTA ATGCTCTGTG ACGCAGTTTT AGTAAATCTG GCCTTTTTGA TTCCCTGCTA TATTCATTAT CACGGCCAAT TTACCCAGGA GTACTTGGCC GACATGCGGG GTTTTCTTCT GGCTACACCG GTTATTTTAC TTGTTTTTTA TGGCTCCAAG CTATACCACC GTGTTTGGGC CTATGCAAGC ACCGGAGAAT TACTTACCAT TATTCAATCT GTTTCGTTAG TAAGCCTCTT ATTTTTTATC CTCACCCATT TTATAGATGA ACCTCACTTA GGAAAAACAA TTTTATCCTT TTGGGCCTTT GCCATTATTT TTGTTGGCGG TTCCAGGTTT GCCTGGCGAC TGTATGTTGA GTATAAAGCG AAAAAAGGAT ATGTCAGAAT GGGAACTCCC AAAAGAGCTT TGATTTATGG TGCAGGTTCC GCCGGTGCCC TGGTGGCCAG AGAATATAAA AATCACTACA ACGGCAATCA ACCGGTTATT GGTTTTATCG ATGATGATAC CAAGAAACAC CACCTGAGTA TTTATGATCT GCCTGTACTG GGCGGCAGAG AAAGTATTCC TTCATTAATA TGTAAACATA ACATAGATGA AATTATCATT GCTATGCCTT CGGTTGCCGG AAAAAGTATG CGTGATATTA TTCAGTTCTG TAAGGATACG GTGGGAGAGG TTAAGATCCT ACCGGGTGTT TACCAGTTTT TAAATGGCAA TGTTTCCATA AGTAAAATTC GACCTGTAGA GATTGAGGAT TTGCTGGGCA GGGAACCAGT ACAGGTGGAT CTTAAGGAAA TATCCCTTTA TCTCAAGGGA AAAGTGGTCC TGGTAACCGG CGCCGGTGGC TCCATCGGTT CCGAGTTGTG CCGCCAAATC GCACAAATGG ACCCGGCCAA AATTATTCTG CTGGGCCATG GGGAAAACAG CATCCATAAA ATTTGGTTGG AGTTACGGGA CAAGTTCCCC CTGGTGCCCC TGGAAGTAGA GATCGCCGAT GTTCGGGACC GTTTTAAACT ACAACTAACC TTTGAAAAGC ACCAACCGCA TGTTGTCTTT CATGCCGCAG CCCATAAGCA TGTGCCGCTG ATGGAAATGC ACCCGGATGA AGCTGTGAAA ACCAACGTCT TTGGGACAAA AAATGTGGCT GAAATGGCAG ATCGGGTAGG ATGCGAAAGA TTTGTTCTGA TCTCTACGGA TAAGGCGGTT AACCCTTCCA GTGTTATGGG AGCAACCAAA CGGATAGCAG AACTGGTGAT TCAGAATTTG TTCAAGGGGT CCCATACCAA GTTTGCTGCG GTGCGCTTTG GCAATGTGCT GGGCAGTCGG GGTAGCGTTG TGCCCATCTT CAAAGAACAA ATTGCCCGGG GGGGTCCTGT TACGGTGACT CACCCGGATA TGACCCGCTA CTTTATGACC ATCCCGGAAG CAGTGCAACT GGTGATTCAA GCTGGTGCCA TGGCCGAGGG TGGGGAGGTT TTCCTGCTGG ATATGGGGGA ACCGGTTAAG ATTGTGGATT TGGCGGCTAA CCTTATAAAG CTATCTGGCT TTGAGCCAGG GAAGGATATT GAGATTAAAT ATACCGGCAT CCGTCCAGGG GAAAAACTTT TTGAGGAATT GCTGACGGCT GAAGAGGGTT CCTCCAGCAC CAAGCACAAA AGGATTTTTG AGGCAAAGCC GGTGGAGATT GATGAGGCAG TGCTGCTGCA GGAACTGCTG AAGCTGGAGA AGAGGGAAGT AACGGAGCAC CAGGAGATTT TTGGCAGGTT GTTGCGGGTG ATGCCGGAGT TGGTGCTGTA TGTGGAGGGC AGGACGGCTT AG
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Protein sequence | MTNKFRIPLL MLCDAVLVNL AFLIPCYIHY HGQFTQEYLA DMRGFLLATP VILLVFYGSK LYHRVWAYAS TGELLTIIQS VSLVSLLFFI LTHFIDEPHL GKTILSFWAF AIIFVGGSRF AWRLYVEYKA KKGYVRMGTP KRALIYGAGS AGALVAREYK NHYNGNQPVI GFIDDDTKKH HLSIYDLPVL GGRESIPSLI CKHNIDEIII AMPSVAGKSM RDIIQFCKDT VGEVKILPGV YQFLNGNVSI SKIRPVEIED LLGREPVQVD LKEISLYLKG KVVLVTGAGG SIGSELCRQI AQMDPAKIIL LGHGENSIHK IWLELRDKFP LVPLEVEIAD VRDRFKLQLT FEKHQPHVVF HAAAHKHVPL MEMHPDEAVK TNVFGTKNVA EMADRVGCER FVLISTDKAV NPSSVMGATK RIAELVIQNL FKGSHTKFAA VRFGNVLGSR GSVVPIFKEQ IARGGPVTVT HPDMTRYFMT IPEAVQLVIQ AGAMAEGGEV FLLDMGEPVK IVDLAANLIK LSGFEPGKDI EIKYTGIRPG EKLFEELLTA EEGSSSTKHK RIFEAKPVEI DEAVLLQELL KLEKREVTEH QEIFGRLLRV MPELVLYVEG RTA
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