Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dred_1984 |
Symbol | |
ID | 4958040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum reducens MI-1 |
Kingdom | Bacteria |
Replicon accession | NC_009253 |
Strand | - |
Start bp | 2178161 |
End bp | 2180293 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640181151 |
Product | DNA topoisomerase I |
Protein accession | YP_001113327 |
Protein GI | 134299831 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.073944 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGTAAAA CATTAGTAAT TGTTGAATCA CCTGCTAAAG CAAAAAGCAT TGGCAAATAT TTAGGCAAAA ACTATACAGT AAAAGCTTCC ATGGGACATG TGAGAGATTT ACCCAAAAGC CAGTTTGGTG TTGATGTTGA AAATGCATTT TCTCCAAAAT ACATAACAAT TCGCGGGAAA GGGGACATCC TTAAAGAACT CCGTTCTGCC GTTAAGAAAG TTGATCATGT TCTGCTGGCA TCTGACCCGG ACCGTGAAGG TGAGGCAATT GCCTGGCATT TAACCAAATT GTTGGAGATA GATGAAGAAA CCCCTTGTCG CATTGAATTT AATGAAATTA CTAAAAATGC CATCCAAGCT GCTGTTAAGC AACCACGGCG CATTGACGTG GATAGGGTTA ATGCACAGCA GGCAAGAAGA ATATTAGACA GGCTGGTGGG TTATAATTTA AGCCCTCTCT TGTGGCGAAA GGTTAAAAAA GGGCTATCTG CAGGTCGAGT TCAGTCAGTG GCTGTACGCC TAATTTGTGA TCGGGAAGAA GAAATACAGG CGTTTATTCC AGAGGAATAC TGGACTCTGA CGGGAAAATT CTTAAAATCA GCAAAGTCTC CCTTTGAGGC TAAACTGCAT AAACACAAGA ATAAAAAAAT AGTAATACCA AATCAAGAGA CTATGGATAA AATCCTAGCA GAATTAAAGG GAGCAGCATA CGTTGTTTCA AACGTAACCA GAAAAGAGAG ATTGCGTAAC CCAGCACCTC CCTTTACCAC CAGTTCCTTG CAGCAGGAAG CTTCGAGAAA GCTTAATTTT ACGTCCCGTA AGACCATGGT TGTGGCACAA CAGCTTTATG AAGGTATCGA TTTGGGCAAA GAAGGACCCG TAGGTTTAGT GACTTATATA CGTACCGACT CCACTAGAGT ATCTGAAACC GCTATTGAAG AAACCCGAAG TTTTATTATG GAGCGGTTTG GCCCAGCCTA TGTACCAAAG CAACCAAGAC AGGTTGTAGC CAAAGGAAAA GTGCAGGATG CCCACGAGGC CATTCGACCC ACATCCGTTA ACCGTGACCC AGATAGTATT AAACAATACT TAACCAATGA TCAATTCAAA CTTTATAAAT TAATATGGTC TCGATTTTTG GCCAGTCAAA TGGCATCGGC GGTTATTGAC ACCACGTCCA TGGATATAAG TGCAGGGGAT TACCTATTCC GGGCCACAGG ATCGATTATT AAATTTCCAG GATTTATGCA AGTTTACATA GAGGGTAACG ATGATGGCCA TAAAGAAGAA GAGAGTGTTT TGCCTGAATT AGCTAAGGGG GATAAGGTGC AGGCCAAAGA CTTAACGCCT AAGCAACATT TTACACAACC TCCCCCACGC TATACGGACG CTACTCTGGT AAAGGTGTTG GAAGAGAAAG GCATTGGACG TCCAAGTACC TATGCACCTA TCGTTGAGAC CATTCAAAGA CGCGGCTACG TTGTAAGAGA AAACAAACAG TTTTATCCCA CCGAATTGGG CGTCATTGTT GTTGATTTAT TGAAAAACCA TTTTCCAGAG ATTATTAATG TAGAATTCAC GGCGGATATG GAGAAAAAAC TTGATCAGAT TGCTGAGGGG GAACAACAGT GGGCGGGTGT TCTAAGGGAT TTTTATGAAC CCTTTTCCCA AACCCTGGAA ACAGCTGAAG AAGCAATTGG TAAAGTGCAA GTGGCAGATG AGGTTTCGGA GGAAATTTGC GAACAATGCG GTAGAAATAT GGTTATTAAA CTTGGGCGAT ACGGTAAATT TCTTGCTTGC CCAGGGTTTC CGGACTGTCG AAATACAAAA CCCCTCTTAG AACCAACCGG TGTTGGCTGC CCTAAGTGTG AGGGTGAAAT GGTATTAAGA CGAAGCAAGA AAGGACGCAA ATTTTATGGA TGCAGCAGAT ACCCGGAATG CGAATTTGTA ACATGGGATA TGCCGACCAA GGAAAAATGC ACCCAATGTG GTGAAATGAT GGTGGAGAAA AAATCCCGGG GCAAAGAAAA GGTTTTGCAA TGTGTAAATG AACATTGTCC CAGTAAAGGA GAAAAGGCTG CATCCAATAT AAACGGAAAT AAAAAGAAGA CAGTGAAAAA CAATAAGAAG TAA
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Protein sequence | MSKTLVIVES PAKAKSIGKY LGKNYTVKAS MGHVRDLPKS QFGVDVENAF SPKYITIRGK GDILKELRSA VKKVDHVLLA SDPDREGEAI AWHLTKLLEI DEETPCRIEF NEITKNAIQA AVKQPRRIDV DRVNAQQARR ILDRLVGYNL SPLLWRKVKK GLSAGRVQSV AVRLICDREE EIQAFIPEEY WTLTGKFLKS AKSPFEAKLH KHKNKKIVIP NQETMDKILA ELKGAAYVVS NVTRKERLRN PAPPFTTSSL QQEASRKLNF TSRKTMVVAQ QLYEGIDLGK EGPVGLVTYI RTDSTRVSET AIEETRSFIM ERFGPAYVPK QPRQVVAKGK VQDAHEAIRP TSVNRDPDSI KQYLTNDQFK LYKLIWSRFL ASQMASAVID TTSMDISAGD YLFRATGSII KFPGFMQVYI EGNDDGHKEE ESVLPELAKG DKVQAKDLTP KQHFTQPPPR YTDATLVKVL EEKGIGRPST YAPIVETIQR RGYVVRENKQ FYPTELGVIV VDLLKNHFPE IINVEFTADM EKKLDQIAEG EQQWAGVLRD FYEPFSQTLE TAEEAIGKVQ VADEVSEEIC EQCGRNMVIK LGRYGKFLAC PGFPDCRNTK PLLEPTGVGC PKCEGEMVLR RSKKGRKFYG CSRYPECEFV TWDMPTKEKC TQCGEMMVEK KSRGKEKVLQ CVNEHCPSKG EKAASNINGN KKKTVKNNKK
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