Gene Dred_1984 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1984 
Symbol 
ID4958040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp2178161 
End bp2180293 
Gene Length2133 bp 
Protein Length710 aa 
Translation table11 
GC content42% 
IMG OID640181151 
ProductDNA topoisomerase I 
Protein accessionYP_001113327 
Protein GI134299831 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID[TIGR01051] DNA topoisomerase I, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.073944 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGTAAAA CATTAGTAAT TGTTGAATCA CCTGCTAAAG CAAAAAGCAT TGGCAAATAT 
TTAGGCAAAA ACTATACAGT AAAAGCTTCC ATGGGACATG TGAGAGATTT ACCCAAAAGC
CAGTTTGGTG TTGATGTTGA AAATGCATTT TCTCCAAAAT ACATAACAAT TCGCGGGAAA
GGGGACATCC TTAAAGAACT CCGTTCTGCC GTTAAGAAAG TTGATCATGT TCTGCTGGCA
TCTGACCCGG ACCGTGAAGG TGAGGCAATT GCCTGGCATT TAACCAAATT GTTGGAGATA
GATGAAGAAA CCCCTTGTCG CATTGAATTT AATGAAATTA CTAAAAATGC CATCCAAGCT
GCTGTTAAGC AACCACGGCG CATTGACGTG GATAGGGTTA ATGCACAGCA GGCAAGAAGA
ATATTAGACA GGCTGGTGGG TTATAATTTA AGCCCTCTCT TGTGGCGAAA GGTTAAAAAA
GGGCTATCTG CAGGTCGAGT TCAGTCAGTG GCTGTACGCC TAATTTGTGA TCGGGAAGAA
GAAATACAGG CGTTTATTCC AGAGGAATAC TGGACTCTGA CGGGAAAATT CTTAAAATCA
GCAAAGTCTC CCTTTGAGGC TAAACTGCAT AAACACAAGA ATAAAAAAAT AGTAATACCA
AATCAAGAGA CTATGGATAA AATCCTAGCA GAATTAAAGG GAGCAGCATA CGTTGTTTCA
AACGTAACCA GAAAAGAGAG ATTGCGTAAC CCAGCACCTC CCTTTACCAC CAGTTCCTTG
CAGCAGGAAG CTTCGAGAAA GCTTAATTTT ACGTCCCGTA AGACCATGGT TGTGGCACAA
CAGCTTTATG AAGGTATCGA TTTGGGCAAA GAAGGACCCG TAGGTTTAGT GACTTATATA
CGTACCGACT CCACTAGAGT ATCTGAAACC GCTATTGAAG AAACCCGAAG TTTTATTATG
GAGCGGTTTG GCCCAGCCTA TGTACCAAAG CAACCAAGAC AGGTTGTAGC CAAAGGAAAA
GTGCAGGATG CCCACGAGGC CATTCGACCC ACATCCGTTA ACCGTGACCC AGATAGTATT
AAACAATACT TAACCAATGA TCAATTCAAA CTTTATAAAT TAATATGGTC TCGATTTTTG
GCCAGTCAAA TGGCATCGGC GGTTATTGAC ACCACGTCCA TGGATATAAG TGCAGGGGAT
TACCTATTCC GGGCCACAGG ATCGATTATT AAATTTCCAG GATTTATGCA AGTTTACATA
GAGGGTAACG ATGATGGCCA TAAAGAAGAA GAGAGTGTTT TGCCTGAATT AGCTAAGGGG
GATAAGGTGC AGGCCAAAGA CTTAACGCCT AAGCAACATT TTACACAACC TCCCCCACGC
TATACGGACG CTACTCTGGT AAAGGTGTTG GAAGAGAAAG GCATTGGACG TCCAAGTACC
TATGCACCTA TCGTTGAGAC CATTCAAAGA CGCGGCTACG TTGTAAGAGA AAACAAACAG
TTTTATCCCA CCGAATTGGG CGTCATTGTT GTTGATTTAT TGAAAAACCA TTTTCCAGAG
ATTATTAATG TAGAATTCAC GGCGGATATG GAGAAAAAAC TTGATCAGAT TGCTGAGGGG
GAACAACAGT GGGCGGGTGT TCTAAGGGAT TTTTATGAAC CCTTTTCCCA AACCCTGGAA
ACAGCTGAAG AAGCAATTGG TAAAGTGCAA GTGGCAGATG AGGTTTCGGA GGAAATTTGC
GAACAATGCG GTAGAAATAT GGTTATTAAA CTTGGGCGAT ACGGTAAATT TCTTGCTTGC
CCAGGGTTTC CGGACTGTCG AAATACAAAA CCCCTCTTAG AACCAACCGG TGTTGGCTGC
CCTAAGTGTG AGGGTGAAAT GGTATTAAGA CGAAGCAAGA AAGGACGCAA ATTTTATGGA
TGCAGCAGAT ACCCGGAATG CGAATTTGTA ACATGGGATA TGCCGACCAA GGAAAAATGC
ACCCAATGTG GTGAAATGAT GGTGGAGAAA AAATCCCGGG GCAAAGAAAA GGTTTTGCAA
TGTGTAAATG AACATTGTCC CAGTAAAGGA GAAAAGGCTG CATCCAATAT AAACGGAAAT
AAAAAGAAGA CAGTGAAAAA CAATAAGAAG TAA
 
Protein sequence
MSKTLVIVES PAKAKSIGKY LGKNYTVKAS MGHVRDLPKS QFGVDVENAF SPKYITIRGK 
GDILKELRSA VKKVDHVLLA SDPDREGEAI AWHLTKLLEI DEETPCRIEF NEITKNAIQA
AVKQPRRIDV DRVNAQQARR ILDRLVGYNL SPLLWRKVKK GLSAGRVQSV AVRLICDREE
EIQAFIPEEY WTLTGKFLKS AKSPFEAKLH KHKNKKIVIP NQETMDKILA ELKGAAYVVS
NVTRKERLRN PAPPFTTSSL QQEASRKLNF TSRKTMVVAQ QLYEGIDLGK EGPVGLVTYI
RTDSTRVSET AIEETRSFIM ERFGPAYVPK QPRQVVAKGK VQDAHEAIRP TSVNRDPDSI
KQYLTNDQFK LYKLIWSRFL ASQMASAVID TTSMDISAGD YLFRATGSII KFPGFMQVYI
EGNDDGHKEE ESVLPELAKG DKVQAKDLTP KQHFTQPPPR YTDATLVKVL EEKGIGRPST
YAPIVETIQR RGYVVRENKQ FYPTELGVIV VDLLKNHFPE IINVEFTADM EKKLDQIAEG
EQQWAGVLRD FYEPFSQTLE TAEEAIGKVQ VADEVSEEIC EQCGRNMVIK LGRYGKFLAC
PGFPDCRNTK PLLEPTGVGC PKCEGEMVLR RSKKGRKFYG CSRYPECEFV TWDMPTKEKC
TQCGEMMVEK KSRGKEKVLQ CVNEHCPSKG EKAASNINGN KKKTVKNNKK