Gene Dred_1968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1968 
Symbol 
ID4957101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand- 
Start bp2163483 
End bp2164532 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content45% 
IMG OID640181135 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_001113311 
Protein GI134299815 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTCTA AAATAACACG ACCAATTATG GTGGGTAAAG TACAGATTGG CGGGGGTGGA 
CCTGTTGTTG TACAATCCAT GACAAATACG GATACCAGGA ATGCCCTTGC TACAATTGAT 
CAAATTAACG AGTTATCTGC GGTGGGCTGT GAAGTAATCA GAGTAGCTGT GCCGGACAAA 
ACAGCTGCCG AAGCTTTACC AACTATTAAA GCAGGTATTA GTATACCCCT AATTGCTGAT 
ATTCACTTTG ATTATCGACT GGCCCTATTG GCTATAGAGG CTGGTGTTGA TGGTTTAAGA 
ATCAACCCTG GCAATATAGG TGGAAAGGAA AAAGTACAAG AAGTTGTAGC AGCGGCCCGG 
GAACGAAGAG TTCCAATACG CATTGGTGTA AATGCTGGTT CCCTGGAAAG GGAATTACTA 
ACTAAATATG GCGGAGTGAC GCCGGATGCG ATGGTGGAAA GTGCCTTAAA CCATATTAGG 
CTATTAGAGG AATTAAACTA CAACGAAATA AAGGTGTCAC TAAAAGCTTC CAATATTCCT 
CTTATGCTGG AAGCTTACCG TAAACTATCT GCCAGGGTAG AATACCCAAT GCATGTGGGT 
GTAACCGAAG CAGGTACGGT AAAAAGTGGT ACCATAAAAT CTGCTGTGGG AATCGGAGCC 
CTGCTTGCTG AAGGGATAGG TGATACCATT CGAGTATCTC TCACCGGTGA TCCTAAATAC 
GAAGTGAATG TAGCATGGGA AATATTAAAG GCCTTGGGAC TACGCAGGCG GGGAGCTGAG 
CTGATTTCCT GCCCTACATG TGGGAGAACG CAAATTAATC TGATAAAATT GGCTGAAGAG 
GTTGAGCAGA GAATAGCTAC AGTGGACAAA CCCATTAAAA TTGCTGTGAT GGGTTGTGCT 
GTCAATGGGC CCGGCGAAGC AAGGGAAGCA GATATAGGGA TAGCAGGTGG CAAAGGGGTG 
GGGCTAATCT TTCGCAAGGG AGAAATAATC CGACAGGTTC CCGAAGACCA ACTGTTAGAA 
GAGTTGCTGA AAGAAATAGA GAATCTTTAA
 
Protein sequence
MNSKITRPIM VGKVQIGGGG PVVVQSMTNT DTRNALATID QINELSAVGC EVIRVAVPDK 
TAAEALPTIK AGISIPLIAD IHFDYRLALL AIEAGVDGLR INPGNIGGKE KVQEVVAAAR 
ERRVPIRIGV NAGSLERELL TKYGGVTPDA MVESALNHIR LLEELNYNEI KVSLKASNIP 
LMLEAYRKLS ARVEYPMHVG VTEAGTVKSG TIKSAVGIGA LLAEGIGDTI RVSLTGDPKY 
EVNVAWEILK ALGLRRRGAE LISCPTCGRT QINLIKLAEE VEQRIATVDK PIKIAVMGCA 
VNGPGEAREA DIGIAGGKGV GLIFRKGEII RQVPEDQLLE ELLKEIENL