Gene Dred_1776 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1776 
Symbol 
ID4955647 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1943148 
End bp1945244 
Gene Length2097 bp 
Protein Length698 aa 
Translation table11 
GC content40% 
IMG OID640180949 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001113126 
Protein GI134299630 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG2524] Predicted transcriptional regulator, contains C-terminal CBS domains
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGTGGAAG TGAAGCTACG AGATATTATG ACCCGCAAGC CCATTGTTCT GACACCGGAG 
CAAACTGTCC AAGAGGTGGC GGAAATCTTC CTGAACCACC AGGTAGATGG TGCACCGGTA
ATTGATAGCA ATGGAAATAT TATTGGACTT TTTACGAAGA GTCAAATCTT CAAACTGGTT
AGTCAGGGAC TGAGTGTACA GACGACAATT GCTACATTAA TTAGAAGAGA CGTTAATAAT
AACTCAAATG ATGATGTGGA AGAAATTTTA ATGCAGGAAT CGGGGCGGTT CCCCCTTACT
GAAGGGCAAG CTTTTGCAGA CATGAAAACA CGGACGAATC TTTTAAGTGC GTTCAATAAT
TTTTATCAAG ATGTTTCTTG TGAGTTTGCC ACAATCATTA ACTCCATTCA TGATCTGATT
GTTTCTGTGG ATGAAGAAGG AAGAATTAAG GTGTTTAACA GATCAGCAGA GAAATTCTTC
GGAAAAACAT TACAAGAGGT AAAGGGAAAA AAGATTAATG AACTATTTCC CAACATTGGA
CTGATGGATG TTATTCAATC AGGCAAAGTT GAAAAGATAC ATAAAGTTTT GCTAAATAAT
CAATATTTTA TCATTAATAA ATTCCCCGTC AAGATGAATG ACAAAATCAC CGGAGCCGTA
GCTGTCTTTC AACAATTTTC CGAGTTGGAA AGTATATCTG GGGAGTTAAA ATCTGTTAAA
GAATTAAATC AAGAATTTGA TGCCATTATA CAATCTTCCT TTGACGGACT TTTCATTACC
GATGGAAACG GGATAACCCT TCGAACGAAC AAAGCCTTTG AACGTATAAC CGGTGCAGAT
GCTTCAACAC TTTTAGGGCG TCACATTGAG GATCTAATAG ATGAGGGAAT TGTTTCGGAA
TCAGTGACAT CCCTTGTCCT AAAGCAGCGA GAAACCGTTA CCATTATGCA AAAAACACAG
ATTGGCAAGA TAACCTTGGC TACAGGTAAT CCAGTCTTTG ACGAAAATGG TAATGTCTTT
CGAGTGGTTT GTAACATCCG TGATATCACT GAACTGAACT TGCTAAAACA GGAATTGGAA
CAGGCCCGGG GATTGAGGCT TCATTACGAG AGACAATTGC GCTCGTTAGG CATTCATTAT
CCCGGCTCCG ACAAGATGGT GGTTAATTCA GCAAAAATGA AGGACCTCAT GGGGCTCATC
ATGCGGTTAG CCGAGGTTAA TTCAACTATT TTAATCACCG GGGAATCAGG AACAGGGAAA
GAATTAATTG CAGAAACACT ACACAAGAAC AGTCCCCGCC AAGATGGACC TTTCATTAAA
GTTAATTGTG GAGCAATTCC AGAAAACTTA TTGGAATCAG AATTATTTGG TTATGAATAT
GGTGCCTTTA CAGGTGCTAA AAAACAAGGT AAAGCTGGCT ATTTCGAGTT GGCAATGGGG
GGGACTCTTT TTCTTGATGA GATTGGGGAC TTGCCTCTGA ACCTGCAGGT TAAACTATTA
CGAGTTCTAC AGAGTAGAGA AATTGTCCGG GTTGGGGGAG AAAAACCCCT TAAGATTGAT
GCTCGCATTT TAGCAGGCAC CAACCGAAAT TTAATTGAAA TGGTTCGACA TAAAGAGTTT
CGGGAGGATC TCTATTATCG ATTAAATGTA GTTCCCGTAA ATGTACCTCC CCTAAGGGAG
AGAAAAGAGG ATATACCAGC ACTGGTTACT CACTTTGTTT TGATGTTTAA TCTTAAATAT
AAACTTAACA AAAGAATTTC CCGTGAGGTG ATAGACATCT TCCTTCGGTA CAATTGGCCA
GGCAATGTTC GGGAACTGGA AAATCTTATT GAAAGATTAG TGGTTGTAAC CCCTAGGGAC
TTATTAACCA GGGAGGATCT CCCTCCTAAT CTGGGAGGAA GTACCCCAGA GAGTTTGCCT
GTTCAGGTAT CTGGCCTTAT GCCCTTGAAA GATGCAGTGG AATATGTAGA AAAACAAGTA
TTAGAAAGGG CCTATGCAGA ATGCAGAACA ACTCGACAAA TGGCCAAAGC ATTAAAAGTC
GATGCTTCTA CTATTGTCCG TAAAGCTGCT AAGTATGGAA TTTCAAAAGC ACAATAG
 
Protein sequence
MVEVKLRDIM TRKPIVLTPE QTVQEVAEIF LNHQVDGAPV IDSNGNIIGL FTKSQIFKLV 
SQGLSVQTTI ATLIRRDVNN NSNDDVEEIL MQESGRFPLT EGQAFADMKT RTNLLSAFNN
FYQDVSCEFA TIINSIHDLI VSVDEEGRIK VFNRSAEKFF GKTLQEVKGK KINELFPNIG
LMDVIQSGKV EKIHKVLLNN QYFIINKFPV KMNDKITGAV AVFQQFSELE SISGELKSVK
ELNQEFDAII QSSFDGLFIT DGNGITLRTN KAFERITGAD ASTLLGRHIE DLIDEGIVSE
SVTSLVLKQR ETVTIMQKTQ IGKITLATGN PVFDENGNVF RVVCNIRDIT ELNLLKQELE
QARGLRLHYE RQLRSLGIHY PGSDKMVVNS AKMKDLMGLI MRLAEVNSTI LITGESGTGK
ELIAETLHKN SPRQDGPFIK VNCGAIPENL LESELFGYEY GAFTGAKKQG KAGYFELAMG
GTLFLDEIGD LPLNLQVKLL RVLQSREIVR VGGEKPLKID ARILAGTNRN LIEMVRHKEF
REDLYYRLNV VPVNVPPLRE RKEDIPALVT HFVLMFNLKY KLNKRISREV IDIFLRYNWP
GNVRELENLI ERLVVVTPRD LLTREDLPPN LGGSTPESLP VQVSGLMPLK DAVEYVEKQV
LERAYAECRT TRQMAKALKV DASTIVRKAA KYGISKAQ