| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1719 |
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| Symbol | |
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| ID | 4955401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 1877727 |
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| End bp | 1879475 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640180894 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001113071 |
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| Protein GI | 134299575 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGATAC ATCATAAATT CTATCCGAGA GCTATCGACA TGTACAGTTT GCCTGTCCAG
GAAATTGATG AAACAGTTTC TGTTTTGGAA GGACAGAGGT TACTGGAATC GGGTCTATTG
GGTGGCTTAT TATTACAAAA ATCAGATCAA TATTTTGTTA TAATGCCATC GGATATCTTC
TGTGCAGCGG AGACGGATAG TTTAAGCAAA AGAGCTTGGC GGCCGGCCTT GTTTATAACA
GAAGATTGTA CAATGACTGA ATTGCTTAAA CAGTGGGGAA AGGCTCCTAC TGCAATACCG
GTTGTCAATA ATACATCCAA TAAACCCATA GGGCTTTTGG AGCCATTATC TGTAGCTAAT
GAAATATATG CTGGGTTTGT CAAGTTGAGG TGCTTTTTTG AGACAGTATT AGATCAGGTA
AATGAAAGTA TATGTGGAAT TGACAAATTG CACAGGGTTA TGATCTGGAA CCCCAAAGCA
GAAGAGCTTT ACAATGTTAA AGCTGAAAAA ATCCTTTCCG GACGTATAGA AGATTTCTTT
TCCAACTTGC GTATTAGTAA CTGTATGCAT GAGAAAAAAG AGGTTAGGGG TCTATATCAC
CAACCCTGCG AGGGTGCCCA TGTATTAATT AACTCGGCAC CTGTTTTTGA CTCTGGGAAG
GTTATTGGCG GCCTAGCAGT TGAAAAGGAT ATTACAGAAA TTGTTCAATT AAATCAAGAG
TTGAATAAAG CCAGTACTCA GGTCAAGCTT TTAGAACAGG AAATTAGAAA AATATCTGGG
CAAGATTGTG CTTTTAATAA ACTAATTGGA CGCAGTGAGG CAATACAGAA GCTAATTGTG
TTTGGCAAAA AGATTAGTGT CACCGAAGCG ACAGTCCTTC TTCGGGGTGA GAGTGGTACA
GGTAAAGAAT TACTGGCCAG GGCCATTCAC CAGAATAGTC CTCGTCATAT GAATCCTTTT
ATTGTAGTCA ATTGCGGAGC GATTCCCAAT AACCTTTTCG AAAGTGAACT CTTTGGTTAC
GAAGGGGGCG CCTTTACCGG AGCTGATCGT AAAGGCAAAC CGGGCATGTT TGAGCTGGCT
AACGGAGGAA CATTGTTTTT AGATGAAGTT GGCGAAATGC CCATAGAAAT GCAAGCAAAA
CTACTTAGGG TATTGCAAGA GGGGACATTC TATCGGGTTG GTGGATCACA ATCAGTCCAT
GTAAATGTAA GGGTTTTGGC TGCCACCCAC CGTAATTTAG AGGATATGAT CAATCGGCGC
CAATTTAGAG AGGATTTGTA TTATCGTCTT AATGTTGTTG CTTTGGAAAT ACCCCCACTA
AGAGACCGTA GGGAGGACAT ACCAGAGCTG GTTCATTTAT TTATGCAGGA ATTCTGTCAA
AAGTATGATA AAAATATTAA AAAGATTGAG CCTGCGGTTA TGACAGCTTT CCTTGATTAT
ACATGGCCAG GAAACGTCCG GGAGCTAAAA AATGCCGTTG AAAGATTGGT TGTTTTAACA
GATGGAGACA TCATTGATGA AGCAGCATTA CCCGAAAACT TGAGAAGAAA TACCTATATA
TCTTTGGTGA CAAGTCCCGT CTCCCAGGGC AAATTAATGA ATGTCGCAGT GGAAGCTGAG
AAACAACTTA TATTAAAAAC CTTACAACAA GTAAGGGGAA ACCGTTCAGA AGCAGCCAGA
GTCCTTGGTA TACCAAGGAG CACTTTATAT TACAAGCTAA GACAACTGGG AATTCCCGCA
AAGGGTTAA
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| Protein sequence | MGIHHKFYPR AIDMYSLPVQ EIDETVSVLE GQRLLESGLL GGLLLQKSDQ YFVIMPSDIF
CAAETDSLSK RAWRPALFIT EDCTMTELLK QWGKAPTAIP VVNNTSNKPI GLLEPLSVAN
EIYAGFVKLR CFFETVLDQV NESICGIDKL HRVMIWNPKA EELYNVKAEK ILSGRIEDFF
SNLRISNCMH EKKEVRGLYH QPCEGAHVLI NSAPVFDSGK VIGGLAVEKD ITEIVQLNQE
LNKASTQVKL LEQEIRKISG QDCAFNKLIG RSEAIQKLIV FGKKISVTEA TVLLRGESGT
GKELLARAIH QNSPRHMNPF IVVNCGAIPN NLFESELFGY EGGAFTGADR KGKPGMFELA
NGGTLFLDEV GEMPIEMQAK LLRVLQEGTF YRVGGSQSVH VNVRVLAATH RNLEDMINRR
QFREDLYYRL NVVALEIPPL RDRREDIPEL VHLFMQEFCQ KYDKNIKKIE PAVMTAFLDY
TWPGNVRELK NAVERLVVLT DGDIIDEAAL PENLRRNTYI SLVTSPVSQG KLMNVAVEAE
KQLILKTLQQ VRGNRSEAAR VLGIPRSTLY YKLRQLGIPA KG
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