Gene Dred_1719 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1719 
Symbol 
ID4955401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1877727 
End bp1879475 
Gene Length1749 bp 
Protein Length582 aa 
Translation table11 
GC content41% 
IMG OID640180894 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_001113071 
Protein GI134299575 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGATAC ATCATAAATT CTATCCGAGA GCTATCGACA TGTACAGTTT GCCTGTCCAG 
GAAATTGATG AAACAGTTTC TGTTTTGGAA GGACAGAGGT TACTGGAATC GGGTCTATTG
GGTGGCTTAT TATTACAAAA ATCAGATCAA TATTTTGTTA TAATGCCATC GGATATCTTC
TGTGCAGCGG AGACGGATAG TTTAAGCAAA AGAGCTTGGC GGCCGGCCTT GTTTATAACA
GAAGATTGTA CAATGACTGA ATTGCTTAAA CAGTGGGGAA AGGCTCCTAC TGCAATACCG
GTTGTCAATA ATACATCCAA TAAACCCATA GGGCTTTTGG AGCCATTATC TGTAGCTAAT
GAAATATATG CTGGGTTTGT CAAGTTGAGG TGCTTTTTTG AGACAGTATT AGATCAGGTA
AATGAAAGTA TATGTGGAAT TGACAAATTG CACAGGGTTA TGATCTGGAA CCCCAAAGCA
GAAGAGCTTT ACAATGTTAA AGCTGAAAAA ATCCTTTCCG GACGTATAGA AGATTTCTTT
TCCAACTTGC GTATTAGTAA CTGTATGCAT GAGAAAAAAG AGGTTAGGGG TCTATATCAC
CAACCCTGCG AGGGTGCCCA TGTATTAATT AACTCGGCAC CTGTTTTTGA CTCTGGGAAG
GTTATTGGCG GCCTAGCAGT TGAAAAGGAT ATTACAGAAA TTGTTCAATT AAATCAAGAG
TTGAATAAAG CCAGTACTCA GGTCAAGCTT TTAGAACAGG AAATTAGAAA AATATCTGGG
CAAGATTGTG CTTTTAATAA ACTAATTGGA CGCAGTGAGG CAATACAGAA GCTAATTGTG
TTTGGCAAAA AGATTAGTGT CACCGAAGCG ACAGTCCTTC TTCGGGGTGA GAGTGGTACA
GGTAAAGAAT TACTGGCCAG GGCCATTCAC CAGAATAGTC CTCGTCATAT GAATCCTTTT
ATTGTAGTCA ATTGCGGAGC GATTCCCAAT AACCTTTTCG AAAGTGAACT CTTTGGTTAC
GAAGGGGGCG CCTTTACCGG AGCTGATCGT AAAGGCAAAC CGGGCATGTT TGAGCTGGCT
AACGGAGGAA CATTGTTTTT AGATGAAGTT GGCGAAATGC CCATAGAAAT GCAAGCAAAA
CTACTTAGGG TATTGCAAGA GGGGACATTC TATCGGGTTG GTGGATCACA ATCAGTCCAT
GTAAATGTAA GGGTTTTGGC TGCCACCCAC CGTAATTTAG AGGATATGAT CAATCGGCGC
CAATTTAGAG AGGATTTGTA TTATCGTCTT AATGTTGTTG CTTTGGAAAT ACCCCCACTA
AGAGACCGTA GGGAGGACAT ACCAGAGCTG GTTCATTTAT TTATGCAGGA ATTCTGTCAA
AAGTATGATA AAAATATTAA AAAGATTGAG CCTGCGGTTA TGACAGCTTT CCTTGATTAT
ACATGGCCAG GAAACGTCCG GGAGCTAAAA AATGCCGTTG AAAGATTGGT TGTTTTAACA
GATGGAGACA TCATTGATGA AGCAGCATTA CCCGAAAACT TGAGAAGAAA TACCTATATA
TCTTTGGTGA CAAGTCCCGT CTCCCAGGGC AAATTAATGA ATGTCGCAGT GGAAGCTGAG
AAACAACTTA TATTAAAAAC CTTACAACAA GTAAGGGGAA ACCGTTCAGA AGCAGCCAGA
GTCCTTGGTA TACCAAGGAG CACTTTATAT TACAAGCTAA GACAACTGGG AATTCCCGCA
AAGGGTTAA
 
Protein sequence
MGIHHKFYPR AIDMYSLPVQ EIDETVSVLE GQRLLESGLL GGLLLQKSDQ YFVIMPSDIF 
CAAETDSLSK RAWRPALFIT EDCTMTELLK QWGKAPTAIP VVNNTSNKPI GLLEPLSVAN
EIYAGFVKLR CFFETVLDQV NESICGIDKL HRVMIWNPKA EELYNVKAEK ILSGRIEDFF
SNLRISNCMH EKKEVRGLYH QPCEGAHVLI NSAPVFDSGK VIGGLAVEKD ITEIVQLNQE
LNKASTQVKL LEQEIRKISG QDCAFNKLIG RSEAIQKLIV FGKKISVTEA TVLLRGESGT
GKELLARAIH QNSPRHMNPF IVVNCGAIPN NLFESELFGY EGGAFTGADR KGKPGMFELA
NGGTLFLDEV GEMPIEMQAK LLRVLQEGTF YRVGGSQSVH VNVRVLAATH RNLEDMINRR
QFREDLYYRL NVVALEIPPL RDRREDIPEL VHLFMQEFCQ KYDKNIKKIE PAVMTAFLDY
TWPGNVRELK NAVERLVVLT DGDIIDEAAL PENLRRNTYI SLVTSPVSQG KLMNVAVEAE
KQLILKTLQQ VRGNRSEAAR VLGIPRSTLY YKLRQLGIPA KG