| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1416 |
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| Symbol | |
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| ID | 4956526 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 1533786 |
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| End bp | 1537520 |
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| Gene Length | 3735 bp |
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| Protein Length | 1244 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640180591 |
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| Product | UvrD-like DNA helicase, C terminal |
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| Protein accession | YP_001112771 |
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| Protein GI | 134299275 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02785] recombination helicase AddA, Firmicutes type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGATA AAAAATGGAC AGCTGAACAA TTGGCCGCCA TCACCACCCG CGATACAAAC
TTACTGGTGG CAGCTGCCGC AGGGGCTGGT AAAACCGCCG TACTGGTAGA ACGTATCATT
GGGCTCATTA CAGATCCGCA CAGGCCGGTG GATGTGGATC AGCTTTTGAT TGTTACCTTT
ACCAATGCTG CAGCGGCAGA AATGCGTGAG CGGATTGGAC AGGCTCTCAG CAAGGCTTTA
CAAGAAAACC CCCACTCTAA ACGGTTGGCC AGGCAATTAA CCATGTTAAA CCGGGCCTCT
ATTACCACCC TGCACTCCTT TTGTCTTGAC TTATTGAGGC GTTATTTTTA CCAGTTAGAT
CTGGACCCGG GTTTTCGGGT AGCTGACGAA GTGGAAGCGG AATTACTCCG TTTGGATGTG
TTGGAGGAAC TTTTTGAGAG ACGCTATAAC CAGGACAATG TGGAAGTCTT TGCCCGTTTG
GTAGATAGCT ATGGTGGACA GAGGGATGAT AGCAGGCTAC AGGATCTAGT CTTGGAACTG
TATCGTTTTT CTGGCAGTCA CCCCCTGCCG GTTCAATGGT TAACAAGCTT GGCAGAAAAC
TATGTTATCC CAGAAGGTAA AACTTTAGAT GACCAGACCT GGATTGTTCA GATTAAGAAA
ACTATCTTCC AGGAGGTAGA GGGTGTTTTA GGACTGCTTA AACAAGCCCA GTGGTTGGCT
AAGCAGCCCG GAGGGCCAGA GCCCTACAGT AAAACCTTAA CGGAAGATAT CATTAATATT
AAACCACTAA CTAATAATGA TTGGGATGCC AGTTGGGAAA AATTATATCG TAGCATTACT
GCAATTAAGT GGAGTAAATT AAGTCCCTGT CGGGGTGAAA TTGATGATCA GCTGAAGAAT
AAGGCCCAAA ACCTAAGAAA TAAAGCCAAG GAAAAGTTCA ACGACATAAT CAATACTTAT
TTCAGTGCAG AACCAACTGT TATCTTAGAG GATTTACGTT CACTACAACC CTTGATAGCA
GACTTGGCCA AATTGACCAT TGAGTTTATG GAGCTTTACC AGAAGAAGAA GCAAGCTAAG
GGTTTAGTGG ACTTTGGCGA TTTGGAGCAT TACTGTTTGA CCATCCTGTT GGATAAAGAG
AATGATGCAG CAGAGTTTAG GCCCTCAGCT GTGGCTATTG AATTGCAACA ACAGTATGCA
GAAGTATTGG TGGATGAGTA CCAGGATATC AACGCTGTTC AGGAAACCAT ATTAAGACTC
GTCTCGAAAA AGAATAACCG TTTTATGGTG GGAGATGTAA AACAAAGCAT TTACCGCTTC
CGACTGGCAG AACCTAAATT GTTTCTTAGC AAATCAGAGC TTTATGCCAA TACGGATAAT
TGCCAGGGTA CCCGCATTGG CCTTAGTAAG AACTTCCGCA GCCGTCTGGA AGTTGTCAAC
GCGGTCAATT TTATCTTTCG GCAAATCATG ACTAAGAAAG CTGGAGAAAT TACCTATGAT
GAACTGGAAG AACTGCATTG CGGTGCTGAC TACCCCCAGG CTGAAGATGT CAAGACAGCC
ACTGGACCTG TAGAAGTTTA CTTAATTGAC CGTAAAGATG CCCAGCTAGA GGAGCAAAAT
ACCGACTCAG CGGAGGAAAA ACTAACGGAC GGTGAGGAAC AGGAAGATCT AGATAGCGAT
CAGGCCGAAG CAAGGCTGAT TGGTCGACGC ATACAAGCGA TGGTTAAGGG AACAGATAAG
GCAATGGGAC CAGAGTTTAA GGTATGGGAT AAAGAAATAG GAAAATATCG GCCGGTCAGC
TATCGTGATA TTGTTATTCT GCTACGGGCC ACCACTGGAC GAGCCAACAC CTTCCTAGAA
GAACTTCGGA CCATGGGAGT ACCAACTTAT GCAGAAGTAG GCACAGGTTA CTTTGAAGCT
GTAGAGGTAG AGACCTTTTT GTCTTTGCTA AAAATTATTG ATAATCCTAG ACAAGATGTT
CCCCTGGCGG GTGTGCTAAG ATCCCCTGTG GTGGGACTTA AAGCAAGTGA TTTGGCAGAG
ATACGCCTCT GCAGTAAGGA AGGCGATTTT TATGATGCGG TTCGGATTGC GGCAGCAGCA
GACTTAGGTG ATGTAGCAGT TACTTTGACA AAATTTCTTC GTCAGTTGGA AAACTGGCGT
TCCCGGGCCC GGAGAGATAC CCTGGCTGAT TTGATTTGGC TTTTATATCG TGAAACGGGC
TATTATGATT ATGTTGGGGG CATGGTAGGT GGCACCCAGC GTCAAGCAAA TTTACGTGTA
CTTTATCACC GGGCAAAACA ATTTGAGGCT ACTTCTTTTC GGGGCTTGTT CCGGTTCCTG
CGCTTTGTGG AAAGGCTAAA GGATTCCGGC AGTGATTTGG GTGCAGCAAG GTCTTTGAGT
GAAAATGAAG ATGTGGTCCG GATCATGAGT ATTCATAAAA GTAAAGGCTT AGAATTTCCC
GTTCTATTTG TAGCGGGTCT CGGCAAACGG TTTAACATGA TGGACCTCAA TAAAGATATG
CTGATGCATA AAGAATTGGG TTTGGGGCCT CAGATTATCC ACCTTGGCAG TAGGGTTTCC
TACCCCAGTT TGCCTAAATT ACTGATTAAG CAGCAAATCC GTAAAGAATC CGTGGCCGAG
GAAATGCGGG TACTGTATGT TGCCCTAACC CGGGCCAGGG AAAAATTAAT CCTAGTGGGA
GCCGTCAGGG ATTTAGAAAA GTCTCTAGAA AAATGGTGCA CTTCAACTTA TCAGGCGGGC
TGGACTCTGC CCGATGCTGA ACTAATGGCT GCCAAATGTT ATTTGGATTG GCTTTGCCCT
GCCATTGCAC GCCATCATAA CGGTCATGAA CTACGGAGCC TGGCTAAGAC AGAGGGGCAA
CCCTTCTCCG AAGTGGCTAC CGACCCTTCT GCCTGGCAGT TAGTATTCCA GGCTTTGAAA
GATATAAAAA ACCAGACTCA GGAAAATAAG GAGCAAAGTC AAGGGCTGTT GGTTAAAATT
AAAGACATGG AACCCTTCGA GGATGCGGGA CTAATAAAGG AAGTTGAGCG CAGATTAAGC
TGGCAATACC CCCGGGCTGA AGTTACCACA CGGCCAGCCA AAGCGGCAGT GACAGAAGTT
AAGCACAAGT TTGATGAATT GGCCCGGCAG GAAGCAGGGG TTATGTCCTA TCGCCCTAAG
ATTAGCGGAC GGCCAAGATT CCTGCAGCAG GATAAGGGAC TCACCCCGGC GGAACGAGGT
TCTGCTATTC ACTTGGTTAT GCAGCATATT CCTTTAGATA AACTGCCGGA TGAAGAAGGT
GTTCAGGTTC TACTACAAAA CCTCATCCAG AAGGAAATTC TTCTGCCGCA ACAAGCAGCT
GCCATTAACC CCAACCATAT TACCGGTTTC TTTGCCAGTT CCATTGGCCA AAGGGTGTTA
CAGGCCCCTA AGGTAGAGAG GGAACTACCC TTCAGCCTGG CACTACCGGC CACAGAGGTT
TATCAGGAAC TACCTGAGTG TGGGGATGAG ATGGTTCTGG TCCAGGGGGT TATCGATTGT
CTGGTGGATG AGGGGGATGG TTTCCTATTA ATTGATTATA AGTCCGATGC AGTATACCCT
GGTCAAGATT CCCCGGTGGA TCGGTATCGT GGTCAAATCA ACCTTTATGC CAGGGCTGTG
CAGGATATAT TAGGAAAACC GGTAAAAGAC AGAGTGATTT ACCTCTTTAA CAACGGACAA
ATTGTACACA TATAA
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| Protein sequence | MSDKKWTAEQ LAAITTRDTN LLVAAAAGAG KTAVLVERII GLITDPHRPV DVDQLLIVTF
TNAAAAEMRE RIGQALSKAL QENPHSKRLA RQLTMLNRAS ITTLHSFCLD LLRRYFYQLD
LDPGFRVADE VEAELLRLDV LEELFERRYN QDNVEVFARL VDSYGGQRDD SRLQDLVLEL
YRFSGSHPLP VQWLTSLAEN YVIPEGKTLD DQTWIVQIKK TIFQEVEGVL GLLKQAQWLA
KQPGGPEPYS KTLTEDIINI KPLTNNDWDA SWEKLYRSIT AIKWSKLSPC RGEIDDQLKN
KAQNLRNKAK EKFNDIINTY FSAEPTVILE DLRSLQPLIA DLAKLTIEFM ELYQKKKQAK
GLVDFGDLEH YCLTILLDKE NDAAEFRPSA VAIELQQQYA EVLVDEYQDI NAVQETILRL
VSKKNNRFMV GDVKQSIYRF RLAEPKLFLS KSELYANTDN CQGTRIGLSK NFRSRLEVVN
AVNFIFRQIM TKKAGEITYD ELEELHCGAD YPQAEDVKTA TGPVEVYLID RKDAQLEEQN
TDSAEEKLTD GEEQEDLDSD QAEARLIGRR IQAMVKGTDK AMGPEFKVWD KEIGKYRPVS
YRDIVILLRA TTGRANTFLE ELRTMGVPTY AEVGTGYFEA VEVETFLSLL KIIDNPRQDV
PLAGVLRSPV VGLKASDLAE IRLCSKEGDF YDAVRIAAAA DLGDVAVTLT KFLRQLENWR
SRARRDTLAD LIWLLYRETG YYDYVGGMVG GTQRQANLRV LYHRAKQFEA TSFRGLFRFL
RFVERLKDSG SDLGAARSLS ENEDVVRIMS IHKSKGLEFP VLFVAGLGKR FNMMDLNKDM
LMHKELGLGP QIIHLGSRVS YPSLPKLLIK QQIRKESVAE EMRVLYVALT RAREKLILVG
AVRDLEKSLE KWCTSTYQAG WTLPDAELMA AKCYLDWLCP AIARHHNGHE LRSLAKTEGQ
PFSEVATDPS AWQLVFQALK DIKNQTQENK EQSQGLLVKI KDMEPFEDAG LIKEVERRLS
WQYPRAEVTT RPAKAAVTEV KHKFDELARQ EAGVMSYRPK ISGRPRFLQQ DKGLTPAERG
SAIHLVMQHI PLDKLPDEEG VQVLLQNLIQ KEILLPQQAA AINPNHITGF FASSIGQRVL
QAPKVERELP FSLALPATEV YQELPECGDE MVLVQGVIDC LVDEGDGFLL IDYKSDAVYP
GQDSPVDRYR GQINLYARAV QDILGKPVKD RVIYLFNNGQ IVHI
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