| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1377 |
|---|
| Symbol | |
|---|
| ID | 4955903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 1480046 |
|---|
| End bp | 1480879 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640180552 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001112732 |
|---|
| Protein GI | 134299236 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000115158 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAGA GAGGTTTGTG GTTTTTGGTT TTGGTTCTTA CCTTAGCTCT GGTGACTATG
GGATGTGGCG GCGGAGAAAA AGAAAAACAA GCCGCTAATC AAGAACCCGC AAAGCAGACT
GAGAAAAATA CCTTGGATCA AATCAAAGAA AAAGGTGTAA TTGTTGCTGG TTTGGATGAC
ACCTTCGCAC CTATGGGCTA CCGTGACGAA AGCAATAAAT TGGTTGGTTT TGATATTGAC
ATGGGCGAAG AAATGGCTAA ACGTTTGGGT GTTAAAATTC AGTGGCAGCC CACCCAGTGG
GACGGTATCA TTATGGCTTT AGACTCTAAG CGTTTTGACA TAATTTTATC CGGTATGACT
GTTACCGAAG AACGTAAAAA GTCCATTAAT TTCTCTGTTC CCTATGTTGG GGATGGCCAG
ATTATGGTAG TTAAGAAAGG TACCACTGGT TTTAATACAG CAGCAGATTT AAAGGGTAAG
GTAGTAGGAA CCCAGGCTGG TAGTTCCGGT GAAGAAGCTG TTAAGAAAGT TGAAGGGATT
AAAGAAGTTA AACTATATAA AACCTATCCC GAAGCCTTTA CCGATCTGCA AATCGGTCGT
ATTCCCGTGG TTGTCTGTGA CCGCATCACC GCCAGTCACT ACATCAGCAA GCGTGCTGAT
ACCTACGAAA TCGTAGGAGA AAAAATCACA GACGAACCTC TGGCAATTGG TCTTCGTAAA
TCCGATCCAG AGTTAAAAGA AGCTATAGAT AACGTACTGA ACGAAATGAA AAAGGATGGA
ACCTTAACTA AAATTTCTAT GAAGTGGTTT AACAGAGATA TTACCGTTAA GTAA
|
|---|
| Protein sequence | MKKRGLWFLV LVLTLALVTM GCGGGEKEKQ AANQEPAKQT EKNTLDQIKE KGVIVAGLDD
TFAPMGYRDE SNKLVGFDID MGEEMAKRLG VKIQWQPTQW DGIIMALDSK RFDIILSGMT
VTEERKKSIN FSVPYVGDGQ IMVVKKGTTG FNTAADLKGK VVGTQAGSSG EEAVKKVEGI
KEVKLYKTYP EAFTDLQIGR IPVVVCDRIT ASHYISKRAD TYEIVGEKIT DEPLAIGLRK
SDPELKEAID NVLNEMKKDG TLTKISMKWF NRDITVK
|
|---|
| |