| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1346 |
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| Symbol | |
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| ID | 4957981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | - |
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| Start bp | 1440442 |
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| End bp | 1443285 |
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| Gene Length | 2844 bp |
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| Protein Length | 947 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640180525 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001112705 |
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| Protein GI | 134299209 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTCCT CAACCCGACA TCTTTTCTTT CCCTTTAACA AATTCACAGT TCTAGATTTC
GGGAATCATT ATTTTATCCA ACAACTGCCG CAAAAATGTA ATGACAAAAA GAACTGCTTA
ATGCAGGAAG AAAATAAAAT AACAACAGAA GTATCTTCTC TGGAGAACCT AAAGCAGGAA
GAACAGGGTC TTAAGGACTA TATTGATAAC CTAATTACGT TAAATGCTAA ATTATCTACA
GATGGCACTG TATTATTGAT TAATGAAACA GCCCTCCGAA CCTTTCACAT GCAACCGGAG
GAAGTAGTTG GCAAAAAACT CTGGGATACT CCCTGGTGGA GCTACGATGC TGACCTTCAT
ACTCAACTAA AAAATGCTGT AAAACAGGCA GCAACAGGCC AAACTATTTA TTACGAAACA
ATAAATCATC TAGTTTCCGG GAAAAAGATA TACATTTATT TTACACTGAA CCCTGTACTA
AATAAAAATA ACGAAGTTAT TTATCTGGTG GCTGAGGGTC GTGATATCAC CAAGCGAAAA
ATGATTGAGC AGGATCTGAT TTCAACAAAC CAGGAATTAG TTGCTGCCAA TGAAGAGCTT
ATATCCATTG AAGAAGAGTT GCGAATATCC AATAAAGAAA TATATCTTGC CCATGAAAGG
CTTAATAATA TTCTGGAGAG TATCACCGAT GCCTTCTATG CGGTAAACCA CCAATGGGAA
GTAACCTATG TTAATACCGA GGCAGAAAAA CTACTGCATA AGAAAAGGCT TGATATTATT
GGCAAAAATA TCTGGCAAGA ATTCTCCGAA ATGGTTCATA CAAAGTTTTA CCACATACTC
CACCAGGTGA TGTCAGAACA AATTTATCAG CAATTTGAAT ATTTCTTTCA GCCTACAGGT
AAGTGGTTTA ATATTCATGC CTACCCTTCA TCTGACGGTC TATCTATCTA CTTTCACGAT
ATTACCGAGT ATAAACTTGT TCAGGAAAAA ATGTCCCTAC AAAACCAATA TTTATCCTCA
CTTCACGAAA CAACACTAGC CTTAATGAAT CGACTGAATC TGGATGAATT ACTGAAAGCA
ATTGTAACTC GTTCTGCTGA GCTTTCCGGA ACCGATCATG GATTTATCTT TCTCATCGAC
AACAATAACC CCTCTGAACT TGTATTAAGG TTTGGCACCG GCACCTATAA ACAAATGGTC
GGGATCAGGC TGAAACCAGG AGAGGGCATG GTGGGAACAG TCTGGCAAAC CGGTGAACCC
TTAATTGTAA AAGATTATTC ATCCTGGCCA GGCAAATCAT CTATATTCTC TCATATTAAA
ATCCACGGGG GGATTGCCTT ACCTCTTAAA TCGGAAGGCA AGATAAATGG TATATTGGGC
ATCATTTATA TAGAAAAGAA TCAAAATTTA GAGTCTAACA ACTTATCTCT TCTTACAGGC
TTCGCTCAAC TTGCCTCCAT TGCCCTAGAC AATGCCAATT TGTATCAGGC CGCCCAACAG
GAACTGGCAG AACGAAAACG TATAGAGGAA ATCCTACGCT ATCTGGCATA CCATGATTCT
TTAACAGAGC TACCGAACCG GACATTGTTT AATGACCGTC TTTCCATGGC CCTTAATCAG
GCACATCGAA ATAAAAATAA ATTGGCAGTT ATGTTCTTAG ATTTGGACCA TTTCAAAAAA
GTCAACGACA CTTTGGGGCA CGACATAGGA GATCAACTGT TAAAAGGTAT TGCACAAAGG
TTTTCCAAAT TACTTCGTAA AGGAGATACC ATTGCCCGTA TTGGCGGAGA TGAATTCACT
ATTTTACTAC ACAATATCAC ACGGGCTGAA AATGCTTCCA TTGTTGCCGA TAAAATCATT
GATACCCTTG CCAACCCTTG GATAATCGGT AACCATGAGT TCCATATTAC CACAAGCATT
GGCATAGCCC TGTATCCCGA TGACGGCACC GACGCCGAGT CCTTGCTAAA AAATGCAGAT
GCCGCCATGT ATCAGGCTAA GGAAATGGGT CGAAACAACT ATCAATTCTA CACACCTACC
ATGAATGCCC AGACCCTACG ACGCTTTGAG TTAGAAAACA ATCTTCGCAG GGCATTGGAT
CGAAAGGAAT TTGTCATTTA CTATCAACCA CAGGTGGAGA TTCATACTGG TAAAATTGTT
GGAGTAGAAG CCCTTATTCG CTGGCAACAT CCCCAGCGAG GTATGATTTC CCCTGCTGAG
TTTATTCCGA TGGCTGAAGA AACCGGTCTG ATCATTCCTA TTGGTGAATG GATTCTGCGT
CGTGCCTGTG CCCAGAACAA AGCCTGGCAG GATAGGGGAT TCTCTCCCAT GAGGGTAACG
GTGAATCTAT CGGCTCGACA ATTTCTGCAG CCACATCTGC CCCAATACAT TTCCAACGTC
TTAGAGGATA CTGGCCTTGG CCCACAATGG TTGGAGTTAG AAATAACGGA AAGTTTAGCC
ATGAAAGATG TTGCTTTCAC AGAAAAAACC CTTATTGAAT TGAGGAAAAT GGGAATTACC
TTAGCCATTG ACGACTTTGG TACCGGTTAT TCTTCCCTCA ATTATTTAAA ACGTTTACCA
ATTGATATAT TAAAAATTGA TCGGTCCTTC ATTCATGATT TGAATACTGA ATCCGATGAT
GTTGCCATTA TAAGTGCCAT CATTACCCTA GGGCACAATT TAAAAATGAA GGTTGTTGCA
GAGGGTGTTG AAACCAAAGA ACAGTTAATG TTTTTGCGAC AGCAACAATG CGACCTAATG
CAAGGCTATC TGTTTACAAA ACCTCTCCCT GTCCGAGAAC TGGAACAAAA ATACTTATCC
AATAACACCA AGTTATTCTG CTAA
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| Protein sequence | MISSTRHLFF PFNKFTVLDF GNHYFIQQLP QKCNDKKNCL MQEENKITTE VSSLENLKQE
EQGLKDYIDN LITLNAKLST DGTVLLINET ALRTFHMQPE EVVGKKLWDT PWWSYDADLH
TQLKNAVKQA ATGQTIYYET INHLVSGKKI YIYFTLNPVL NKNNEVIYLV AEGRDITKRK
MIEQDLISTN QELVAANEEL ISIEEELRIS NKEIYLAHER LNNILESITD AFYAVNHQWE
VTYVNTEAEK LLHKKRLDII GKNIWQEFSE MVHTKFYHIL HQVMSEQIYQ QFEYFFQPTG
KWFNIHAYPS SDGLSIYFHD ITEYKLVQEK MSLQNQYLSS LHETTLALMN RLNLDELLKA
IVTRSAELSG TDHGFIFLID NNNPSELVLR FGTGTYKQMV GIRLKPGEGM VGTVWQTGEP
LIVKDYSSWP GKSSIFSHIK IHGGIALPLK SEGKINGILG IIYIEKNQNL ESNNLSLLTG
FAQLASIALD NANLYQAAQQ ELAERKRIEE ILRYLAYHDS LTELPNRTLF NDRLSMALNQ
AHRNKNKLAV MFLDLDHFKK VNDTLGHDIG DQLLKGIAQR FSKLLRKGDT IARIGGDEFT
ILLHNITRAE NASIVADKII DTLANPWIIG NHEFHITTSI GIALYPDDGT DAESLLKNAD
AAMYQAKEMG RNNYQFYTPT MNAQTLRRFE LENNLRRALD RKEFVIYYQP QVEIHTGKIV
GVEALIRWQH PQRGMISPAE FIPMAEETGL IIPIGEWILR RACAQNKAWQ DRGFSPMRVT
VNLSARQFLQ PHLPQYISNV LEDTGLGPQW LELEITESLA MKDVAFTEKT LIELRKMGIT
LAIDDFGTGY SSLNYLKRLP IDILKIDRSF IHDLNTESDD VAIISAIITL GHNLKMKVVA
EGVETKEQLM FLRQQQCDLM QGYLFTKPLP VRELEQKYLS NNTKLFC
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