| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1154 |
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| Symbol | |
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| ID | 4955574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 1224655 |
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| End bp | 1226673 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640180323 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein |
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| Protein accession | YP_001112513 |
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| Protein GI | 134299017 |
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| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1
[COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
[TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.225673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGGATTA AATTAGCTAG CAAGGCTGGG TTTTGTTATG GCGTAAAAAG AGCCATTGAT
TTAGCTTTAT CCACTGCCAA AGAAAAGGCA GGAAACATTT ATACCCTAGG CCCCTTAATC
CATAATCCCC AAGTGGTTCA AAATTTAGCG GAAAATGGCA TATGTGAAAT AAACGATATT
GGTGAAGTTA AAGAAGGGAC CGTTATTATT CGTTCCCATG GTGTAGGACC AGAAATTATA
CAAGCTGCCA GGGAAAAAGG GCTTAAGGTA TTGGATGCAA CTTGTCCCTT TGTAGCAAGG
GCCCAGAAAT ATGCACATGA AATGGCTGCA CAGGGAATTC CTGTATATAT TTTGGGAGAT
CCGGGACATC CTGAAGTTCA GGGTATTCTA GGTTGGACTG AGGGCAAAGG GAGCGTTATA
GATAATCCAA GTGAAATAAC TCGGGTGGAA CACCCTAAGG TAGGGGTCGT GGCACAAACT
ACACAGCCAT TGAGTAACTT TCAGGCATTA TTAGAAGCTC TACAAAATCA GGGAGTAGAA
GTGGATGCCA GAAATACAAT CTGCCATGCC ACTGGCGAAC GCCAACGGGC AGCAATGGAA
TTGGCCAGAG AAGTGGATGT CATGGTTGTG GTAGGGGGTA AGAATAGTGC CAATACAAAA
AAACTGGCCA AGATATGTCA GGAAACCGGG ACACCAACCT ATCATGTGGA ATCCGCAAGG
GAATTACGTA AGGAATGGTT CCTAGGGCAT GAAATAGTTG GTCTGACAGC GGGCGCTTCA
ACACCTGACG CAATTATAGA GGAGGTTAAA AAGAGGATGA ATGAAATGGA CCAGATGACC
AATGGTGAAG AAGGAATGAG CGAAGCTATG GAGGTGAAAT CTCCACAGGC TGGTGAGCTT
GTTAAAGGTA TTGTTGTTCA AGTTGGTATG GATGAGGTGT TAGTTGATAT TCGAGCTAAA
TCCGAAGGTG TGATACCTCG AAAAGAAATG GCCTTTTATG GTGTGGATAA TCTCCAAGAA
ATTGTAAAAG TTGGAGATGA AATAGAGTGT GTTGTTATCA AAGCTGAGGA TAATGAAGGA
AAAATTATTT TATCCAAAGA ACGTGCAGAT GCAGAAAAGG CTTGGGATGG TTTAGAAGAA
GCCATGGAAC AAGGTACAAT TATTAAAGGT GTTGTACGTG AAGTTGTCAA AGGTGGCATG
TTGGTGGATG TTGGCGTTCG TGCATTTTTA CCAGCTTCCT TGGTAGAACG TGGTTATGTT
GAGGACCTTT CGAAATACTT AAATCAAGAG TTTGAAGTGC GTGTTATTGA AATGAATAAA
CAACGTAAAA AAGTAGTTGT ATCACGTAAA GCTGTTTTAG AAGAACAAAA TGCACGCAAG
CGTGAAGAAT TACTTGCTTC GCTTCAAGAA GGACAAATTG TAAAAGGCAT TGTTCGCCGT
ATTACCAATT TTGGTGCCTT TGTGGATCTT GGTGGATTGG ACGGTTTACT GCATATCTCA
GAAATGAGTT GGCATCGTAT TAATCATCCT CAGGAAGTAG TTAAAGTTGG GGATGAACTG
GAAGTTATGG TATTAAAGGT TGATACCCAA AATGAGAAGA TATCTTTAGG TCTGAAGCAA
GTTTTACCAA ATCCATGGGA TAATGTTGAA GAAAAGTATC CCGTTGGCAA TATATTTAAT
GCCAAGGTGG TACGTTTGGC TCCCTTTGGC GCTTTTGTAC AATTAGAACC TGGTGTTGAA
GGACTTGTTC ATATTTCTCA TTTAGCTGAC CGCCATGTTG AAAAGCCAGA GGATGTAGTA
AAAGAGGGGG AGGAAGTCCA GGTTAAAGTC CTCAGTATGG ATCCCTCTGA AAAACGTGTT
CGCCTTTCCA TTCGTGAGGT CAATGGTGAA AGACGGTCCG CCCGGGAAGC ACGCCCCCGG
AAACAAGAGG AGGTTCAGGA ACAGAATGTA ATGAATGAAA CTCCTGAAGA GAAAATAACC
CTTGGGGATG TATTTGGGGA TATGTTTAAA GAAAAATAA
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| Protein sequence | MRIKLASKAG FCYGVKRAID LALSTAKEKA GNIYTLGPLI HNPQVVQNLA ENGICEINDI
GEVKEGTVII RSHGVGPEII QAAREKGLKV LDATCPFVAR AQKYAHEMAA QGIPVYILGD
PGHPEVQGIL GWTEGKGSVI DNPSEITRVE HPKVGVVAQT TQPLSNFQAL LEALQNQGVE
VDARNTICHA TGERQRAAME LAREVDVMVV VGGKNSANTK KLAKICQETG TPTYHVESAR
ELRKEWFLGH EIVGLTAGAS TPDAIIEEVK KRMNEMDQMT NGEEGMSEAM EVKSPQAGEL
VKGIVVQVGM DEVLVDIRAK SEGVIPRKEM AFYGVDNLQE IVKVGDEIEC VVIKAEDNEG
KIILSKERAD AEKAWDGLEE AMEQGTIIKG VVREVVKGGM LVDVGVRAFL PASLVERGYV
EDLSKYLNQE FEVRVIEMNK QRKKVVVSRK AVLEEQNARK REELLASLQE GQIVKGIVRR
ITNFGAFVDL GGLDGLLHIS EMSWHRINHP QEVVKVGDEL EVMVLKVDTQ NEKISLGLKQ
VLPNPWDNVE EKYPVGNIFN AKVVRLAPFG AFVQLEPGVE GLVHISHLAD RHVEKPEDVV
KEGEEVQVKV LSMDPSEKRV RLSIREVNGE RRSAREARPR KQEEVQEQNV MNETPEEKIT
LGDVFGDMFK EK
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