Gene Dred_1142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1142 
Symbol 
ID4957745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1214415 
End bp1215344 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content43% 
IMG OID640180311 
Productpseudouridine synthase 
Protein accessionYP_001112501 
Protein GI134299005 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGGAAA GATTACAAAA AATATTGGCA AAAGCGGGAG TGGCTTCCCG TCGCCATTCT 
GAAGAATTAA TTATCAGTGG TCAAGTTAAA GTTAATGGCA AAACAGTTAC AGAAATGGGA
TTAAAAGTAG ATCCAACAAA GGATAAAATT GAAGTAAAGG GGAAACCCCT TCCTCCACTG
GAAAAAAAGG TTTATTTACT GATGAATAAA CCCAGGGGAT ATGTAACGAC CCTTAGTGAT
GAAAGGGATA GAAAAACTGT TGTTGATTTA CTAAAAGGGG TAGAACAAAG GGTATATCCC
GTAGGACGGC TGGACTACGA TTCAGAGGGA TTGCTTCTGT TGACCAATGA TGGAGAGCTA
ACCCAGGCCC TTACCCATCC TAAACATAAG GTCAAAAAAA CCTACTTGGC GAAGGTGGAT
GGCATACCTG AAACAGAGGA ACTAAAAGCA ATGGCCAAAG GCTTGGTGTT GGAAGATGGA
CCCACAGCAC CGGCTGATGT AAGGCTTGCA GGCACTGGGG ATAACAGGGC TTTACTGGAG
ATTTCCATTC ACGAAGGCCG CAATCGTCAG GTAAGGAGAA TGTGTGAGCA TATTGGTTAT
AAAGTTCTTC GATTAAGAAG GACCCGTATA GGGACCCTTG AACTGGGTAG CTTAAAATCA
GGTGAGGTAC GGGCATTAAC CAAGAAGGAA TTAAGGGAGC TAGCCTCATT GGTGGGGTTA
AAGCAAAATT ATAATGATAT GCAGCTTACC ACCGAGGTTC AGAAGAAAAA GCCCAGCCCC
TGCGGCAGGG TTGGCCGAAT CAAAGGAAAG GTCTCCGAGC AAAAAAGTAA TAGGTCTGCA
AAGTCAAAGG TTAACGAATT TTTTGAAAAA GGGACATTAA GGGGTAAAAA TAGTAAAAGT
AAGGTTTCCA GCAGAGAGAG TAGTAGATAG
 
Protein sequence
MEERLQKILA KAGVASRRHS EELIISGQVK VNGKTVTEMG LKVDPTKDKI EVKGKPLPPL 
EKKVYLLMNK PRGYVTTLSD ERDRKTVVDL LKGVEQRVYP VGRLDYDSEG LLLLTNDGEL
TQALTHPKHK VKKTYLAKVD GIPETEELKA MAKGLVLEDG PTAPADVRLA GTGDNRALLE
ISIHEGRNRQ VRRMCEHIGY KVLRLRRTRI GTLELGSLKS GEVRALTKKE LRELASLVGL
KQNYNDMQLT TEVQKKKPSP CGRVGRIKGK VSEQKSNRSA KSKVNEFFEK GTLRGKNSKS
KVSSRESSR